Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0216 ATGGCTTCAGGGGCTATATTCTCGTCGCTGCGGCGGAGAAGGTCACCGTCGTTGGAAGCATTTCTGGCCCCCGTTGACTTGACAGACGTTGCACTCGTCCAAACGCTCGCTCACGTGGCCACCGAGCTCGTCACGTGCTTCTCCGATCGACCCTTCTTCTTCCAGCGCAAGAATTCCAGGTCCCTGATCCGAAAAGTCGAAGTCTTTCAGCTGCTCCTGGAGTACCTTAGCGATTCTTCAGGCGCGTGTCTTCCACCTACCGCCGTGCTCTGCCTCAAGGAGCTGTACCTGCTTCTCTATCGGTCCAAAATTCTTCTTGATTACTGTGCTCAATCGTGTAAGTTGTGGCTTTTGCTTCAGAACCATTCGATTTCTGGCCATTTCCATGATTTGAACCAGGAAATTTCAACCCTTTTGGATGTTTTCCCAATTGGGGATATTGGGTTGAGTAAGGATGTTAGGGAACAAGTTGAGCTCTTGCAGAAGCAATCAAGGAAGGCTAGGTTGTTTATAGACAAGAATGATGATGCGCTTAGGATAAGATTTTTCGCTTTTTTTGATGAATTTGAGAGTGGGAAGATTCCTGATTCTGCTGAATTGAGGGATTTCTATGTTGATAAGCTTAGGATTTTGGATGCTAGGAGTTGTAGAAGTGAAATTGAGGGTTTGGAAGAGCAGATTGTTAATCATGAAGGGGACATTGAGCCTACAATTTCTGTGCTCAATGGTTTTGTGGCGATGACGCGGTATTGCAGGTTCTTGATCTTTGGGTTTGAGGAGGATGAACTTGCTTTGGATAATGGGGGTCAGAAAAAGATCAAGAAGAGATTGATTACTCAGGAAATCGCCGAAACATTTATGACTGTTCCAAAGGACTTTTGCTGCCCAATATCATTGGATTTGATGCAAGACCCGGTGATAATTTCCACAGGGCAAACATATGATAGGAGTTCCATTTCCAGGTGGGTGGATGAAGGCCACACGACTTGTCCAAAAACAGGGCAAATGCTTGCCCACAATCGCCTTGTTCCGAACCGTGCGCTGAGGAATTTGATAGTGCAGTGGTGCTCTGCACATGGAATTCCGCTCGAACAGCCAGAAGTTATGGATCCAATGGCTGAAACTTTTGCATCAGCTTGTCCATCCAGAACTTCCCTTGAAGCCAACAGAGCCACAGCAACACTTCTCATCCAGCAGCTCGCTAATGGGTCGCAAGCCGGGAAGACTGTTGCTGCTAGGGAGATAAGAATGCTAGCCAAAACTGGTAAAGACAACCGCGCTTTCATTGCAGAAGCGGGGGCAATTCCTCATCTTCGAAATTTACTGTCATCTCCTAATGCTGTCGCTCAGGAGAATTGTGTAACTGCATTGCTCAACCTATCCATTTTCGACAAGAACAAAAGCCGGATCATGGATGAGGAAGGGTGTCTTGGATCGATTGTCAATGTCTTGAGATTCGGCCACACAACAGAAGCAAGGGAAAATGCTGCCGCGACATTGTTCAGCTTATCTGCAGTTCATGACTATAAGAAGAGGATTGCAGATAAGACGGGAGCTGTCGAAGCTTTGGCAGGATTGTTGCAAGAGGGGACTTCAAGAGGAAAGAAGGATGCTGTAACGGCTTTGTTCAATCTTTCCACTCACACCGAGAATTGTGTTAGAATGATAGAGGCAGGCGCAGTAACGGCTCTAGTTGGAGCTTTGGGGAATGAAGGAGTCGCGGAGGAAGCAGCAGGTGCCTTGGCCTTGATCGTCCGGCAGCCGGTTGGAGCCAAAGCAGTGGTGAAGGAAGAGGCAGCAGTTGCCGGATTGATTGGCATGATGCGTTGTGGAACACCAAGAGGTAAAGAGAATGCAGTTGCAGCATTGTTGGAGTTGTGCCGGAGTGGCGGTGCAGCTGCAACTGAAAGGGTGGTTAAGGCACCATCTTTGGCCGGATTACTTCAGACCTTGCTTTTTACCGGAACAAAGCGAGCCAGACGAAAGGCAGCTTCACTTGCAAGAGTGTTTCAGAGATGTGAAGCTTTACATTATGGTGGATTAGGTGTAGGGTATGCATTTGCCAGCAATTCTGCAGCAACTAGGGATACAAGCTTTGCTGGTGATGTTTCAGTGCCAATGTCCATTTCTGTCCCAGTTTTATAG 2145 0.476 MASGAIFSSLRRRRSPSLEAFLAPVDLTDVALVQTLAHVATELVTCFSDRPFFFQRKNSRSLIRKVEVFQLLLEYLSDSSGACLPPTAVLCLKELYLLLYRSKILLDYCAQSCKLWLLLQNHSISGHFHDLNQEISTLLDVFPIGDIGLSKDVREQVELLQKQSRKARLFIDKNDDALRIRFFAFFDEFESGKIPDSAELRDFYVDKLRILDARSCRSEIEGLEEQIVNHEGDIEPTISVLNGFVAMTRYCRFLIFGFEEDELALDNGGQKKIKKRLITQEIAETFMTVPKDFCCPISLDLMQDPVIISTGQTYDRSSISRWVDEGHTTCPKTGQMLAHNRLVPNRALRNLIVQWCSAHGIPLEQPEVMDPMAETFASACPSRTSLEANRATATLLIQQLANGSQAGKTVAAREIRMLAKTGKDNRAFIAEAGAIPHLRNLLSSPNAVAQENCVTALLNLSIFDKNKSRIMDEEGCLGSIVNVLRFGHTTEARENAAATLFSLSAVHDYKKRIADKTGAVEALAGLLQEGTSRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAKAVVKEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPSLAGLLQTLLFTGTKRARRKAASLARVFQRCEALHYGGLGVGYAFASNSAATRDTSFAGDVSVPMSISVPVL* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0216 714 SUPERFAMILY ARM repeat 394 670 IPR016024 -
Amo20g0216 714 SUPERFAMILY RING/U-box 278 362 - -
Amo20g0216 714 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 694 - -
Amo20g0216 714 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
Amo20g0216 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Amo20g0216 714 SMART arm_5 548 586 IPR000225 GO:0005515
Amo20g0216 714 SMART arm_5 588 628 IPR000225 GO:0005515
Amo20g0216 714 SMART arm_5 507 547 IPR000225 GO:0005515
Amo20g0216 714 SMART arm_5 422 462 IPR000225 GO:0005515
Amo20g0216 714 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
Amo20g0216 714 Pfam U-box domain 289 359 IPR003613 GO:0004842|GO:0016567
Amo20g0216 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 362 IPR013083 -
Amo20g0216 714 Pfam Armadillo/beta-catenin-like repeat 423 461 IPR000225 GO:0005515
Amo20g0216 714 PANTHER U BOX DOMAIN-CONTAINING 11 694 - -
Amo20g0216 714 Coils Coil 213 233 - -
Amo20g0216 714 Gene3D - 392 668 IPR011989 -
Amo20g0216 714 CDD RING-Ubox_PUB 293 335 IPR045210 -
Amo20g0216 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0216 Amo-Chr20 2965030 2967721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0216 1 714 U-box Gene Family AT1G29340 69.891 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0216 - - gmx:100811153 1169.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0216 20 2965030 2967721 Amo20g0216 20 2965030 2967721 ECH
Amo13g3939 13 131627810 131632035 Amo20g0216 20 2965030 2967721 PCT
Amo20g0216 20 2965030 2967721 Amo13g3939 13 131627810 131632035 PCT