Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0215 ATGATGATGAAGTGGGGAGGAAGAAAAGCTGGTTCTTCTTCTCCTTCTGTGTCTTCTCATCACCATGCTTCTTCTTTTTCTTGGTTCTCTAAGTTAAAGCACATGAGAATCAACTCATCATCATCCGAGCCAACTACTACTACTCATCATGCAAACATCAAGAAGCAGAAGCCACCATACCAGAATAATACTTCTGATGCTGTTACTACTGCTTCTTCTACTCTTGCTGATGATGCTTCTTCTTCTTTATTCCACGATGAAGATGATTTTATTGACTCTTCTTCAAGTTTCCCTGCTGCTGCTAGAAGAAACAGTAGTGCTATGAAGCATACAGCAAGAGAAGGTGCTCTCATCAGCAACAACAAGAACAAGTTGAAGAAGGAGAACAAGGAGAGTGGTATTATTCAAAAGGAAGAAAGAAAATTTGTGGATGATAGGAAGGTTGAAATGGAGATGCAAGAGTACACTAGAGATGACAAGGAATATGAAAACCTAAGGAGGAGATTTGAGAGGAAAGCTCAAAAGGTTTTGCAAGAGCAACTCTTCAACTTAGAAAAAGAAAGAGGAAGAGAATCAAGAAAATTAGTACAAGAGATCAAAGATGTGGAGATGCAGTTGGATTCACCAAGAACAATATGCACACCAAGGATACATTATTCACTCCCATCTTCATCTGATTCCAAGAGTTCGAATTCTGTTAGAAGTAAGAAGAATAATGATATTTTGGAGAAGAAAATGATGATGAATCCTACTGATGAGGAGTTGAACTCGAACTTGAACTTGAAGGTGAAGACCAAGAAAAAGAAGCAAGATGGAAGCAGCAGCAGAGAAATTATTCATCAGAGGAGGAAATCAAAGCATAGCCCCAGAATCAGAATACATTCTCCAAGGATGTCTTCTCCCAAGATTGATCAAGTTTGCAGAATAAAGGCTATAGAAGACATGAAGAAAGCAAGACTGAAGATGAAGAAAGAAAGAGAGGAGATTATTGTGCAGGAAGCACTACTCACAAAAGGGTCAGAAGATAGATTTGCTGTTATAAAATGTTCATTGGATCCAAGAAAAGATTTCAGAGACTCTATGATTGAGATGATCATTGAGAAGCAGATTAGAAACCCAGAAGAAATGGAAGAGCTTCTGGCATGTTATCTGACATTGAATGCTGATGAGTATCATGATCTCATCATTCAAGTTTTCAGGCAAGTTTGGTTTCAAATGAGCTATGGTGCTTAA 1233 0.382 MMMKWGGRKAGSSSPSVSSHHHASSFSWFSKLKHMRINSSSSEPTTTTHHANIKKQKPPYQNNTSDAVTTASSTLADDASSSLFHDEDDFIDSSSSFPAAARRNSSAMKHTAREGALISNNKNKLKKENKESGIIQKEERKFVDDRKVEMEMQEYTRDDKEYENLRRRFERKAQKVLQEQLFNLEKERGRESRKLVQEIKDVEMQLDSPRTICTPRIHYSLPSSSDSKSSNSVRSKKNNDILEKKMMMNPTDEELNSNLNLKVKTKKKKQDGSSSREIIHQRRKSKHSPRIRIHSPRMSSPKIDQVCRIKAIEDMKKARLKMKKEREEIIVQEALLTKGSEDRFAVIKCSLDPRKDFRDSMIEMIIEKQIRNPEEMEELLACYLTLNADEYHDLIIQVFRQVWFQMSYGA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0215 410 ProSiteProfiles OVATE domain profile. 346 405 IPR006458 -
Amo20g0215 410 MobiDBLite consensus disorder prediction 213 299 - -
Amo20g0215 410 MobiDBLite consensus disorder prediction 37 73 - -
Amo20g0215 410 Pfam Transcriptional repressor, ovate 350 406 IPR006458 -
Amo20g0215 410 MobiDBLite consensus disorder prediction 1 21 - -
Amo20g0215 410 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 345 406 IPR006458 -
Amo20g0215 410 PANTHER TRANSCRIPTION REPRESSOR OFP4 17 406 - -
Amo20g0215 410 Coils Coil 152 179 - -
Amo20g0215 410 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 17 406 IPR038933 GO:0045892
Amo20g0215 410 MobiDBLite consensus disorder prediction 259 279 - -
Amo20g0215 410 MobiDBLite consensus disorder prediction 217 236 - -
Amo20g0215 410 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0215 Amo-Chr20 2953951 2955183 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Amo20g0215 Ovate 8.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0215 - - ahf:112783885 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0215 20 2953951 2955183 Amo20g0215 20 2953951 2955183 ECH