Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0214 ATGGATGAAGTTCAGGGAAGTTCAAGTTCCTTACCTCCATTTCTCACAAAGACATATGAGATGGTGGATGATCCTTCCACCAATTCCATTGTTTCATGGAGTGACAGCAGCAGGAGTTTTGTTGTTTGGAATCCACCAGAGTTTGCAAGGGTCTTGTTACCAAAATTCTTTAAGCACAATAACTTCTCAAGCTTTATCAGACAGCTCAACACTTATGGCTTTAAGAAGATTGACCCTGAACAATGGGAATTTTCCAATGATGATTTTGTAAGAGGTCAACCAAATCTTATGAAGAATATTCATAGGCGCAAACCGGTTCATAGCCATTCTTTGCAGACTCTACATGGACAAGTGGCTATTCCGCTAACCGAGTCAGAACGGAAGAGTCTGAAAGATGACATTGAAAAGCTTAAGCATGATAAACAAGAACAGATTCTGGAGTTACAGAGACAAGAACAAGAGTGGGAAAATTTTAAGTTAAAAATAGATTGCACAAAGGAGCGTTTGGAAACAATGGAAAAGAGGCAACAGAATATGATTTCTTCTATTTCTCAAGTGCTGCATAAACCTGGGGCTGCATTAAATCTGTTGACACTGACAGAAAACATGGAAAGAAAACGAAGGTTGCCAAAAGGCAGCAGTCACTTTACTGATGAAGCTAGCATTGAAGATCCTATGGAAATATCCCAAGTGTTACCTAGTGAAAATGCAGAGAGTAGTGGCTTCGTCACATCATGCATAGAACGAATGAATCAGCTCGAGTCAACCCTGGTATTTTGGGAATATATTGCACAAGATGTGAATGAAACCATTGTTCAAAGTCATTCAAACTTGGATGTTGATGAATCCACAAGTTGTCCAGATAGTCCAGCGGTATCTAGTGTGCAACTCGATGATGAAGTTCAGCCTAAGTCATCCGGGATAGACATGAATTCTGAGCCAGCTTTACCTTCTGATACTGTTGCATTGAAGGAACAACCTGTTGGAACTACCCCTGCAGCTACTGGTGTTAACGACAAATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCAACAGAACTGCAAGAGGCACAATCAGAAAGAATGGATTTGGACAACAAAAAGAATGAAGGAAAGCCTAGTGCACATGGCAAATTTTGGTGGAACATGAGGAATGTAAATAATCTTCCAGAACAGATGGGTCATTCTTAG 1194 0.4028 MDEVQGSSSSLPPFLTKTYEMVDDPSTNSIVSWSDSSRSFVVWNPPEFARVLLPKFFKHNNFSSFIRQLNTYGFKKIDPEQWEFSNDDFVRGQPNLMKNIHRRKPVHSHSLQTLHGQVAIPLTESERKSLKDDIEKLKHDKQEQILELQRQEQEWENFKLKIDCTKERLETMEKRQQNMISSISQVLHKPGAALNLLTLTENMERKRRLPKGSSHFTDEASIEDPMEISQVLPSENAESSGFVTSCIERMNQLESTLVFWEYIAQDVNETIVQSHSNLDVDESTSCPDSPAVSSVQLDDEVQPKSSGIDMNSEPALPSDTVALKEQPVGTTPAATGVNDKFWEQFLTENPGSTELQEAQSERMDLDNKKNEGKPSAHGKFWWNMRNVNNLPEQMGHS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0214 397 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 384 IPR027725 -
Amo20g0214 397 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo20g0214 397 Coils Coil 120 168 - -
Amo20g0214 397 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo20g0214 397 MobiDBLite consensus disorder prediction 348 380 - -
Amo20g0214 397 MobiDBLite consensus disorder prediction 279 313 - -
Amo20g0214 397 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo20g0214 397 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo20g0214 397 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo20g0214 397 MobiDBLite consensus disorder prediction 359 375 - -
Amo20g0214 397 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Amo20g0214 397 Gene3D - 6 104 IPR036388 -
Amo20g0214 397 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 384 - -
Amo20g0214 397 MobiDBLite consensus disorder prediction 279 314 - -
Amo20g0214 397 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0214 Amo-Chr20 2949990 2952260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0214 7 396 HSF AT4G18880 53.250 5.44e-119 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo20g0214 HSF_DNA-bind 2.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0214 K09419 - gmx:100798004 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0214 20 2949990 2952260 Amo20g0214 20 2949990 2952260 ECH
Amo13g5686 13 158793356 158796343 Amo20g0214 20 2949990 2952260 PCT
Amo20g0214 20 2949990 2952260 Amo13g5686 13 158793356 158796343 PCT