Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0206 ATGCAACTTCTCAACTTCTTTGGCTTCTTACTTGTTACACTTTGTTGCTTCCAGTTGCTGAGAATATCCGAATCAAAATTGCCAAAAGAAGAAGTTGAAGCTCTCAAAGAAATTACCAGTACAATGGGGGCGGTCTATTGGGAGTTCGATAATGATTCCTGTGACATTATAAGGGTTGGACTAACTCGAGAACCTCCTGACGAATCGGAGAGAAGCATTGTTTGTGACTGCAGTTTTGAAAATAATACTGTCTGTCATGTTACTAAGATAACCCTCAAGCGCCTTAGTCTACCTGGAGCACTCCCACCTCAACTGGTCAAGCTACCTTTTCTTCAAGATATAGATTTTGCATACAATTGTTTAAATGGCACAATTCCAAAGGAATGGGCTTCAATGAATTTAACTTCCATCTCTCTTCTTGTGAATCGCTTGTCAGGGGAAATTCCAAAGCATCTAGGAAATATTACTACTCTCACATACCTGATGCTGGAAGCAAACAATTTTTCTGGAGTTGTTCCACCTGAACTTGGGAAGCTGATCAACTTGCAGACCTTGGTACTGTCATCAAATCAGTTGACCGAGAACTTACCATCGGCACTTGCTGGGCTGCAAAATTTAACAGACTTTAGGATAAGTAGTAACAACTTTACAGGAACCATACCTGATTTCATAAAGAACTGGCAATTTCTCCAAAGACTAGAAATGCATGGAAGTGGACTAGAAGGACCGATTCCTTCGAGTATATCTCTATTGAAGAACTTACTTCAGTTAAGAATCAGTGATATAAAAAGTCCTAGCCAGGTTTTTCCTTCACTGCAGAGCATGACAGCACTAACTACATTGGTTTTAAGGAACTGTAACCTGTCTGGGGAGATACCTTCATACATATGGACCTTGACAAATCTAGCAACTTTGGATGTCAGTTTTAACAAGCTAGTTGGGAAAATTCCCGAAGTCATTAATGTAAAGCGTATGAGATACATCTACCTAACAGGTAACATGCTCAGTGGAAATGTACCAAAGTCAATACTGAAGGATGGAAGTAGCATTGATCTCTCTTACAACAACTTTAGTTGGCAAGGGCCTGAGCAACCTGCTTGTCAGGAAGACATTAGGAACTTAAATGTGAATTTGTTCAGAAGCTCAATGATGAAGAATAAGTTAGAGGAATATGTGCCTTGCAAAAGTAACTTCAATTGTCCACGATATTCAAGTTGCTTACATGTCAATTGTGGTGGAAAGGATATACAAGTAAAAGATAATAAAGGAAACAGCCTCTATTTTGGAGATGGAGAAGTTGCAGGTGGTACTGCAACATATTTCTATAGCTCCAGTGGTCAATGGGGATTTAGTAGCACTGGGGACTTTCTGGATGATTTCGAAGCTCAGAACATACGTTACACTGTATCTTTATCATCTTCAAATATGTCTGAATTGTACACAACAGCACGCATATCTCCAATTTCACTCACTTACTTCCATAATTGCATGGAAAATGGGAACTATACTGTAAATCTTCACTTTGCTGAAATACAGTTTTCAAATGATAACACATATAAAAGCCTTGGGAAGCGTATATTTGATATCTATGTTCAGGAAAAATTGATTAGAAAGGATTTTGATATAGAAAATGAGACACATGCTGCTGTAAAACCACTGGTAGTGCTTATATACAATGTCAGCATCACAAATAATGTTTTGGAGATTAGATTCTACTGGGCCGGGAAAGGAACAACTCGAATACCTGATTATGGAGTTTATGGTCCCCTTGTATCAGCATTGTCTGTTGTTTCTGTTCACTAG 1803 0.3866 MQLLNFFGFLLVTLCCFQLLRISESKLPKEEVEALKEITSTMGAVYWEFDNDSCDIIRVGLTREPPDESERSIVCDCSFENNTVCHVTKITLKRLSLPGALPPQLVKLPFLQDIDFAYNCLNGTIPKEWASMNLTSISLLVNRLSGEIPKHLGNITTLTYLMLEANNFSGVVPPELGKLINLQTLVLSSNQLTENLPSALAGLQNLTDFRISSNNFTGTIPDFIKNWQFLQRLEMHGSGLEGPIPSSISLLKNLLQLRISDIKSPSQVFPSLQSMTALTTLVLRNCNLSGEIPSYIWTLTNLATLDVSFNKLVGKIPEVINVKRMRYIYLTGNMLSGNVPKSILKDGSSIDLSYNNFSWQGPEQPACQEDIRNLNVNLFRSSMMKNKLEEYVPCKSNFNCPRYSSCLHVNCGGKDIQVKDNKGNSLYFGDGEVAGGTATYFYSSSGQWGFSSTGDFLDDFEAQNIRYTVSLSSSNMSELYTTARISPISLTYFHNCMENGNYTVNLHFAEIQFSNDNTYKSLGKRIFDIYVQEKLIRKDFDIENETHAAVKPLVVLIYNVSITNNVLEIRFYWAGKGTTRIPDYGVYGPLVSALSVVSVH* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0206 600 Pfam Leucine rich repeat 157 216 IPR001611 GO:0005515
Amo20g0206 600 SUPERFAMILY L domain-like 82 340 - -
Amo20g0206 600 Pfam Malectin domain 406 594 IPR021720 -
Amo20g0206 600 Gene3D - 404 599 - -
Amo20g0206 600 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 84 549 - -
Amo20g0206 600 Gene3D Ribonuclease Inhibitor 47 194 IPR032675 -
Amo20g0206 600 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE RFK1, PUTATIVE-RELATED 84 549 - -
Amo20g0206 600 Gene3D Ribonuclease Inhibitor 195 401 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0206 Amo-Chr20 2878281 2883081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0206 4 598 Receptor kinase-like Gene Family AT1G29750 56.134 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0206 - - qlo:115990047 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0206 20 2878281 2883081 Amo20g0206 20 2878281 2883081 ECH
Amo13g5682 13 158715406 158722463 Amo20g0206 20 2878281 2883081 PCT
Amo20g0206 20 2878281 2883081 Amo13g5682 13 158715406 158722463 PCT