Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0201 ATGGAGACGAAAAACCCTTCGAGGTTTACGCTGATGAAGCAGTCATCATTGGCACCAGAACACCGCAGAGAAGAAGGATCAGAGCTCCACAACGATGGTAATGGCGAGGAAGGTATCCATCCGGGTGTGAGGTTGATGTATTCGGCGAACGAGAACGATCTTGAGGGTATTCGTGAAGTTTTGGATTCGGGTGTGAGCGTCAATTTCAGAGACATTGATGACCGCACTGCACTTCACGTTGCTGCGTGTCAGGGATTAACCGATGTGGTTTCTTTGTTGCTCGAGAAAGGAGCTGAAGTCGACGCCAAAGATCGCTGGGGGAGCACGCCACTTGCAGATGCTATATTTTATAAAAACAATGATGTGATCAAACTATTGGAGCAGAATGGAGCAAAGCCTCTGATGGCCCCTATGCATGTTCATCATGCACGTGAAGTACCAGAATATGAAATCAATCCTAAAGAACTTGATTTTACCAATAGTGTGGAGATAACAAAGGGCACTTTCTGTAGTGCATTCTGGCGTGGGACAGAGGTTGCAGTAAAAAAACTTGGGGAGGACGTAATTACTGATGAGGAGAAAGTGAAGGCCTTTAGAGACGAGCTTGCACTATTCCTGAAGATCCGGCATCCAAATGTAGTTCAGTTTCTGGGTGCTGTGACACAGAGTAGCCCGATGATGATCGTGACAGAATATCTTCCCAAGGGAGATCTCCGTGCATTCTTGGGAAGAAAAGGAGCTTTGAAACCTTCAACAGCTGTGAAATTTGCACTTGATATTGCCAGGGGAGTGGGTTATTTACATGAGAATAAGCCGTCACCAATCATTCACCGTGATCTAGAGCCTTCTAACATATTGCGGGATGATTCGGGACACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAGACCTCTAACTTGCCAAGATACATCTTGCCGCTATGTTGCTCCTGAAGTTTTCAAACAAGAAGAATATGACACCAAAGTAGATGTATTCTCATTTGCGTTAATCCTGCAAGAGATGATTGAAGGTTGTCCACCATTTTCTGCAAAGAAAGAAGACGAAGTTCCTAAGGTATATGCCGCAAAAGAGCGTCCACCTTTTCGAGCTCCAGCCAAGCGTTATGCCCATGGGATAAGAGAATTGATTGAAGATTGCTGGAATGAAAATCCAGCAAAGAGACCAACATTTAGACAAATAATACCAAGGCTGGAATCCATCTACAACACTATTGGTCAAAAAGGACGTTGGAAGGTTAAACCGTTGAAATGCTTCCAGAATCTGGAGGCCTTGTTGAAGAGGGATCGTTCGAATTTTAGCAGCCGAGGCAGTTCATCGCGTTCAAGGTCCAGCCGGATATGA 1383 0.4505 METKNPSRFTLMKQSSLAPEHRREEGSELHNDGNGEEGIHPGVRLMYSANENDLEGIREVLDSGVSVNFRDIDDRTALHVAACQGLTDVVSLLLEKGAEVDAKDRWGSTPLADAIFYKNNDVIKLLEQNGAKPLMAPMHVHHAREVPEYEINPKELDFTNSVEITKGTFCSAFWRGTEVAVKKLGEDVITDEEKVKAFRDELALFLKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRAFLGRKGALKPSTAVKFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDRPLTCQDTSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKKEDEVPKVYAAKERPPFRAPAKRYAHGIRELIEDCWNENPAKRPTFRQIIPRLESIYNTIGQKGRWKVKPLKCFQNLEALLKRDRSNFSSRGSSSRSRSSRI* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0201 460 SMART ANK_2a 106 135 IPR002110 GO:0005515
Amo20g0201 460 SMART ANK_2a 37 69 IPR002110 GO:0005515
Amo20g0201 460 SMART ANK_2a 73 102 IPR002110 GO:0005515
Amo20g0201 460 ProSiteProfiles Protein kinase domain profile. 158 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0201 460 Gene3D Phosphorylase Kinase; domain 1 150 233 - -
Amo20g0201 460 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Amo20g0201 460 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 442 - -
Amo20g0201 460 Pfam Ankyrin repeats (3 copies) 45 133 IPR002110 GO:0005515
Amo20g0201 460 MobiDBLite consensus disorder prediction 1 40 - -
Amo20g0201 460 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Amo20g0201 460 SUPERFAMILY Protein kinase-like (PK-like) 158 412 IPR011009 -
Amo20g0201 460 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 442 - -
Amo20g0201 460 SUPERFAMILY Ankyrin repeat 44 135 IPR036770 -
Amo20g0201 460 PIRSF ILK 1 434 - -
Amo20g0201 460 MobiDBLite consensus disorder prediction 17 37 - -
Amo20g0201 460 Pfam Protein tyrosine and serine/threonine kinase 172 411 IPR001245 GO:0004672|GO:0006468
Amo20g0201 460 CDD STKc_MAP3K-like 164 411 - -
Amo20g0201 460 Gene3D Transferase(Phosphotransferase) domain 1 234 455 - -
Amo20g0201 460 Gene3D - 10 149 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0201 Amo-Chr20 2835257 2839961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0201 8 432 MAP Kinase Kinase Kinase AT4G18950 68.545 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Amo20g0201 PK_Tyr_Ser-Thr 3.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0201 - - gmx:100790126 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0201 20 2835257 2839961 Amo20g0201 20 2835257 2839961 ECH