Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0200 ATGGATGAAAGGTCGTTTTATCACTTTATAAATACCCATCTCTTCATCCATCTATCTCCTTCCTCTTCTTCTTCTAAGAACAAACAAGCTAAGAAAGATCAAAGCCAAAAGAAAATCAAGGGCAAGAGCTCAGAACCTCTGTTGTGTCTTAATTTATTTTTCCCTAACACAAACACCATCTGGAAGCTGATCAAGACCAGAAAATTTTTCTTCATATTGTTGAGAAGATTTTGTGGTGAAATAAAGAAGATGGCTTTTCCAGGAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGAAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCGCAGAAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGCCTTTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTATAAGAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCCGAGATTAATGCTCAGCAAGAAGCAGAAAAACTGCGTGCCCAAATTAGTAACCTGCAGAATAACAACAGGCAAATTCTAGGTGAATCATTAAGCAGTATGAATGTGAGGGATCTCAAAAACCTGGAGGGTAAATTAGAGAAAGGAATCAGCAAGATTCGTTCCAAAAAGAACGAGCTGCTGTTTGCTGAAATTGAATACATGCAAAAGAGGGAGATAGATTTGCACAACAACAACCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGGAACAACATGATTGATGTCATTGTGATTGTGATTGTCACCCTAGCTACCTAA 876 0.3927 MDERSFYHFINTHLFIHLSPSSSSSKNKQAKKDQSQKKIKGKSSEPLLCLNLFFPNTNTIWKLIKTRKFFFILLRRFCGEIKKMAFPGANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGAGSASEINAQQEAEKLRAQISNLQNNNRQILGESLSSMNVRDLKNLEGKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNNMIDVIVIVIVTLAT* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0200 291 ProSiteProfiles MADS-box domain profile. 103 163 IPR002100 GO:0003677|GO:0046983
Amo20g0200 291 ProSiteProfiles K-box domain profile. 186 276 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g0200 291 Coils Coil 186 213 - -
Amo20g0200 291 Coils Coil 223 243 - -
Amo20g0200 291 Pfam K-box region 187 270 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g0200 291 MobiDBLite consensus disorder prediction 20 39 - -
Amo20g0200 291 Gene3D - 115 181 IPR036879 GO:0003677|GO:0046983
Amo20g0200 291 CDD MADS_MEF2_like 104 173 IPR033896 GO:0000977|GO:0045944
Amo20g0200 291 PRINTS MADS domain signature 140 161 IPR002100 GO:0003677|GO:0046983
Amo20g0200 291 PRINTS MADS domain signature 105 125 IPR002100 GO:0003677|GO:0046983
Amo20g0200 291 PRINTS MADS domain signature 125 140 IPR002100 GO:0003677|GO:0046983
Amo20g0200 291 PANTHER SERUM RESPONSE FACTOR HOMOLOG 103 277 - -
Amo20g0200 291 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 103 277 - -
Amo20g0200 291 SMART madsneu2 103 162 IPR002100 GO:0003677|GO:0046983
Amo20g0200 291 SUPERFAMILY SRF-like 104 175 IPR036879 GO:0003677|GO:0046983
Amo20g0200 291 ProSitePatterns MADS-box domain signature. 105 159 IPR002100 GO:0003677|GO:0046983
Amo20g0200 291 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 112 159 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0200 Amo-Chr20 2808592 2816049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0200 84 277 MADS-box Gene Family AT3G58780 69.652 6.03e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo20g0200 K-box 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0200 K09264 - gmx:732595 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0200 20 2808592 2816049 Amo20g0200 20 2808592 2816049 ECH
Amo13g5677 13 158674405 158678568 Amo20g0200 20 2808592 2816049 PCT
Amo20g0200 20 2808592 2816049 Amo13g5677 13 158674405 158678568 PCT