Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0180 ATGCAACTTCAGTTTACAGATGAGGAAGCTGTCTATCGATTCTACAAGACTTATGCAATGATGCACGGTTTCGCTGTGAGGTTGGATGAAGTCAGACGCGATAGCGATGGTTCCGTAATTATGCGCCAAATTGTTTGCAATCGGGCGGGCTCAAGAAAGGAAGAGGTTGTTTCGTTCTACGAAGAGCACTCTCATGAATTAGTTGCTCCACTCGACGTTAGCATGATGCCTGAGTATCGCACATTCAGTGTCTCGGATAAAGCTCAGGCGAAGAATTTGCACGACATAGGCATCAGGACCTGTCACATCTTGGGATACTTGGCTGCTCAAAAAGCATATGTGAGAAAGAAAGATACCCTTCTTGAATTCATCAATAACATGGAGACCGTGGTTAGCCATTACAGGAACAATGAAAGAGTCGCAGAGTTCAATAGTAAATATACCGCTCCAGTACTTGTGACTTCTTTGCCGACACTTGAAGATTTTGCTGCAAAGACTTTCACTCGTAACATGTTCCGGGAGGTCAGGAAGGAAATTGAGGGTGCTTGTGCAATGAATACAGAGTTGGTAATTCAGGATGGTGGAAAACTATACTTCAAGTGTAACATTTTTGGAGTGCCAGAGATTCATCATGTGGTTGAGTTTGACAGAGTTCGGGGGATTCTCCGTTGCGAGTGTCTTGATTCTGATAAGGTACTAAAGTGTCGTTTGGGTGTGTTGGGTGCTGAGTGTTCTAGGTTGATGGATTTGGCCTGTAAGAATTCAAGTGATTTTGTCGAAGCAATGAATAGTGTTGTCGACACAATTACAAAACTCCAAAAGCGAGGTGAAAATCCACGTAACGCTAACTTAGACGATGACTGCGTTGGTGACCCATTGGTGGTGAAGAGTAAGGGAGCTCCCAAGAAAAACTCAAAATTCAAGCAACAGAGAAAGTGTTCAAACTGCGGTGTGACAGGGCACTACAACAAAAGTTGTCCTAATGCTCCTGGTAGAATCCCAAAGGAGCCAGTAGACGATGATACAGAAACGAATATCAGCAGCATCCTCCCTAAGCGCAAAAGACATGACAGTGTGAAAAATCAGCATAAGATGGAAAAAGATAGGAACATTGGTGGTGGAACAGCACCAACCTCAGCAGCTAAGTCGGCTTTTATTGATCAAGTGAAAACATCAAGTCTTGGTCCCAATATCCCGGTTTGTGCGTCTACAAGTAACGAAGAGTCCGGGATGGGTTCCATACCAGCTGGGTCTTCTGTTGTGGCCCCTGAAACTGGAATGGCAGCTTGA 1290 0.445 MQLQFTDEEAVYRFYKTYAMMHGFAVRLDEVRRDSDGSVIMRQIVCNRAGSRKEEVVSFYEEHSHELVAPLDVSMMPEYRTFSVSDKAQAKNLHDIGIRTCHILGYLAAQKAYVRKKDTLLEFINNMETVVSHYRNNERVAEFNSKYTAPVLVTSLPTLEDFAAKTFTRNMFREVRKEIEGACAMNTELVIQDGGKLYFKCNIFGVPEIHHVVEFDRVRGILRCECLDSDKVLKCRLGVLGAECSRLMDLACKNSSDFVEAMNSVVDTITKLQKRGENPRNANLDDDCVGDPLVVKSKGAPKKNSKFKQQRKCSNCGVTGHYNKSCPNAPGRIPKEPVDDDTETNISSILPKRKRHDSVKNQHKMEKDRNIGGGTAPTSAAKSAFIDQVKTSSLGPNIPVCASTSNEESGMGSIPAGSSVVAPETGMAA* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0180 429 MobiDBLite consensus disorder prediction 353 370 - -
Amo20g0180 429 Pfam FAR1 DNA-binding domain 13 55 IPR004330 -
Amo20g0180 429 ProSiteProfiles Zinc finger CCHC-type profile. 311 328 IPR001878 GO:0003676|GO:0008270
Amo20g0180 429 MobiDBLite consensus disorder prediction 353 379 - -
Amo20g0180 429 SUPERFAMILY Retrovirus zinc finger-like domains 299 334 IPR036875 GO:0003676|GO:0008270
Amo20g0180 429 MobiDBLite consensus disorder prediction 403 429 - -
Amo20g0180 429 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 4 55 - -
Amo20g0180 429 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 4 55 - -
Amo20g0180 429 Gene3D - 294 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0180 Amo-Chr20 2329563 2331997 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g0180 FAR1 1.7e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0180 - - ahf:112729906 610.142