Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0177 TATATGTGTATTAGGTGTAGTTTAAGAGGGTGTTTATGCATTGAACTTGAATTTGGATTACTTGGAGCTTTGTTGCGCTCGGAGCTATTGAACAAAGGCTGGTCATGTCTATCTCAAGATCGACCAGTTGAAAGTTACGAGCCATGTCAACTCAAACAAATGCAAATAAATGTTCCTCTACAAGTTTTTAAAGGTATCCATAAAGCATCTACAGCAGGAGTTCATGATACATCTGTAAAGCAGTGGATTCATATGGTTTGTGGGCTTTGGACTCCTGGAACAAGATGCCCGAATGTTAATACAATGAGTGCTTTTGATGTATTCTGTTCGCAGTTCCCCAGAAAAGATGTGGTTTGTTCCATCTGCAACCACTGGGGTGGTTCTTGTATAGAGTGCAGAGTCAAATTGTTTGGTCAAAACCTGTTGCAATGTGAGACTGAAGGCGATGATGARGAGAACGTTGGATTTTATGGAAGATGTATGCTTCATGCTGTTGACCCTAGATATCAGTCCAAGTATGATCCTGTTGATGATATAGATAGCTTAGAAGAAAGGGAATTCACCTGTGCCAGGACAGAGGGTTACAAGGGCTGTAAACGGGATGGTTTCCATAGATATTGTTACAGTGCCTTAAAGGGAAAGGGAGGAAGTGGATGCCTTGTTCCTGAAGAACAGTTAAATGCTTGGATTCACATTAATGGGCAGAAATCGTGTCCACAAAGACTCCCTAAACACGCATCAGATATTGAGCATGATTGTCGGAAGGAATATGCTCGGTACAAGCTAGCAAAGGGCTGGAAACACCTTGTTGTTTACAAATCTGGAATTCATGCCCTTGGTCTTTACACTTCTCGATTCATTTCCCGTGGTGAAATGGTTGTTGAGTATGTTGGCGAAATTGTGGGGTCACGGGTAGCTGATAAGAGAGAGATTGAATATCAATCTGAAAGAAAACTTCAGTACAAGGGTGCTTGCTACTTCTTCAGGATTGACAAAGAACATATTATTGATGCCACAAAGAAAGGGGGCATAGCCCGTTTTGTTAATCACTCGTGCTTGCCGAATTGCGTGGCGAAAGTGGTTACTATAAGGCATGAGAAGAAGGTTGTCTTTTTTGCAGAGAGGGACATATATCCTGGTGAAGAAATAACATATGATTACCACTTTAACAACGAAGATGAAGGAAAGAAGATTCCATGTTATTGCAATTCCAAAAATTGCAGGCGCTATCTTAACTGA 1239 0.4108 YMCIRCSLRGCLCIELEFGLLGALLRSELLNKGWSCLSQDRPVESYEPCQLKQMQINVPLQVFKGIHKASTAGVHDTSVKQWIHMVCGLWTPGTRCPNVNTMSAFDVFCSQFPRKDVVCSICNHWGGSCIECRVKLFGQNLLQCETEGDDEENVGFYGRCMLHAVDPRYQSKYDPVDDIDSLEEREFTCARTEGYKGCKRDGFHRYCYSALKGKGGSGCLVPEEQLNAWIHINGQKSCPQRLPKHASDIEHDCRKEYARYKLAKGWKHLVVYKSGIHALGLYTSRFISRGEMVVEYVGEIVGSRVADKREIEYQSERKLQYKGACYFFRIDKEHIIDATKKGGIARFVNHSCLPNCVAKVVTIRHEKKVVFFAERDIYPGEEITYDYHFNNEDEGKKIPCYCNSKNCRRYLN* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0177 412 SUPERFAMILY SET domain 266 412 IPR046341 -
Amo20g0177 412 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 68 412 - -
Amo20g0177 412 Pfam SET domain 280 387 IPR001214 GO:0005515
Amo20g0177 412 Gene3D SET domain 163 412 IPR046341 -
Amo20g0177 412 ProSiteProfiles Post-SET domain profile. 396 412 IPR003616 -
Amo20g0177 412 SMART PostSET_3 396 412 IPR003616 -
Amo20g0177 412 CDD SET_SETD1-like 269 408 - -
Amo20g0177 412 Pfam PHD-zinc-finger like domain 75 134 - -
Amo20g0177 412 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 68 412 - -
Amo20g0177 412 ProSiteProfiles SET domain profile. 267 388 IPR001214 GO:0005515
Amo20g0177 412 SMART set_7 267 394 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0177 Amo-Chr20 2309764 2314792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0177 269 412 C2H2 Transcription Factor Family AT2G23740 33.939 2.75e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo20g0177 SET 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0177 - - ahf:112755751 707.212