Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0172 CCCCCAGTCCCCAACCTTCGTTCTCACCGTCCAAGAAGCCGTACGCTCACCATCGTTCTCACCCTCAAGCAGCCGACTCGCTTTCGCCCTTCCCTCAACTCCCCTTTTCTAGCAAAACAGTTCTGGAACTGCCCTCCTGAGATAATGGCAAAACTTGCCACTGGTGGATTCTCTGAGGCCAACTTCCTGGCTGAGGGGGGATTTGGATCCGTTCACAGAGGGGTTCTACCGAATGGACAAGTCGTTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGACCTTGAGTTTTGCTCAGAGGTAGAAGTCCTGAGTTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTACTAGTTTACGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGAGACAGCGAGAACCATTAGAATGGGTTGCACGGCAAAAAATTGCCATTGGAGCTGCTCGTGGGTTACAATATCTTCATGAAGAGTGCAGAGTGGAATGCATTATCCACCGTGACATGCGGCCTAACAACATTCTCATAACTCATGATTTTGAACCACTGGTTGGTGATTTTGGATTGGCGAGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATAACTGAAAAAGCTGATGTTTATTCATTTGGGGTGGTATTGGTGGAGCTTGTTACAGGGAGAAAAGCTGTGGATCTCATGCGGCCTAAGGGACAGCAGTGTCTTACTGAGTGGGCACCACCTCTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTGGGGAACCAATACTTAGAAAATGAGGTCTATTGCATGTTGCATGCTGCATCATTATGCATACGGCGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTTCGTATACTGGACGGCGACATGGTCATGGACACAAGTTACATTTCAACTCCAAGTTATGATGTGGGAAACCGGAGTGGCCGAATCTGGTCGGAGCCGCTGCAGAGGCAGCACCATTACAGCGGTCCTCTGTTAGAGGAGTCACTTGAATCATTCAGTGGGAAGATATCTCTTGACAAATACAAGCCTGCATATTGGGATAGGGACAACAAAGCAAGAAGGACTTCATGTGAAGATGACATTTAG 1161 0.472 PPVPNLRSHRPRSRTLTIVLTLKQPTRFRPSLNSPFLAKQFWNCPPEIMAKLATGGFSEANFLAEGGFGSVHRGVLPNGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWVARQKIAIGAARGLQYLHEECRVECIIHRDMRPNNILITHDFEPLVGDFGLARYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLMRPKGQQCLTEWAPPLLEEYAIEELIDPRLGNQYLENEVYCMLHAASLCIRRDPHSRPRMSQVLRILDGDMVMDTSYISTPSYDVGNRSGRIWSEPLQRQHHYSGPLLEESLESFSGKISLDKYKPAYWDRDNKARRTSCEDDI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0172 386 ProSitePatterns Tyrosine protein kinases specific active-site signature. 178 190 IPR008266 GO:0004672|GO:0006468
Amo20g0172 386 Gene3D Transferase(Phosphotransferase) domain 1 133 321 - -
Amo20g0172 386 Pfam Protein tyrosine and serine/threonine kinase 62 308 IPR001245 GO:0004672|GO:0006468
Amo20g0172 386 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 52 377 - -
Amo20g0172 386 Gene3D Phosphorylase Kinase; domain 1 39 132 - -
Amo20g0172 386 CDD STKc_IRAK 63 311 - -
Amo20g0172 386 ProSiteProfiles Protein kinase domain profile. 57 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0172 386 SUPERFAMILY Protein kinase-like (PK-like) 46 322 IPR011009 -
Amo20g0172 386 PANTHER INACTIVE PROTEIN KINASE SELMODRAFT_444075 52 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0172 Amo-Chr20 2248177 2250792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0172 54 328 Trihelix Transcription Factor Family AT1G70460 49.505 2.03e-91 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Amo20g0172 PK_Tyr_Ser-Thr 4.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0172 - - ahf:112783851 653.284