Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0145 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCACAAGAAGGGGAAAAGCGAGTTCTGGACTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCTGCAGTTGGGAGCCGTGTGGTGTACTTTCCACAAGGTCACAGTGAACAGGTGGCAGTGTCAACTAATAAGGAAGTGGATGCTCATATTCCCAACTACCCAAGCTTGCCACCCCAACTCATTTGTCAACTCCATAATCTTACTATGCATGCCGATGCTGAGACCGATGAAGTGTATGCACAGATGACCTTACAACCTTTGAATCCTCAAGAGCAAAAGGAGGCATATCTTCCAGCAGAGTTGGGAAGTCCAAGCAAACAGCCAACAAACTACTTCTGCAAGACTTTGACAGCCAGTGACACAAGCACCCATGGAGGATTCTCTGTTCCTCGCCGAGCAGCAGAGAAAGTCTTTCCTCCATTGGATTTCTCTCAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGCAATGAATGGAAATTCAGACATATCTTTCGAGGCCAGCCTAAAAGGCATCTACTCACAACCGGATGGAGTGTTTTTGTTAGTGCTAAAAGGCTTGTTGCTGGTGATTCTGTGCTCTTTATCTGGAATGACAAGAACCAGTTGCTTCTTGGCATCCGACGCGCGAATCGACCACAAACTGTGATGCCTTCCTCAGTGTTGTCAAGTGATAGCATGCATTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACCAATAGTCGTTTCACTATTTTCTATAATCCACGTGCTAGTCCATCAGAATTCGTCATACCTCTGGCAAAGTATGTTAAGGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTGTTTGAAACTGAGGAGTCCAGTGTGCGACGATATATGGGCACCATAACTGGCATTAGTGACTTGGATGCTGCTAGGTGGCCAAATTCACATTGGCGCTCTGTGAAGGTTGGTTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTCTCTTTGGGAGATTGAGCCATTAACAACATTTCCTATGTATCCATCTCCATTTCCTCTACGCCTTAAACGACCTTGGCCTCCAGGACTACCATCATTCCATGCAGGATTGAAGGACGAAGATTTTGGTATGAGTTCTCCACTGATGTGGCTGCGAGACGCCGACAGGGGTGGTCTTCAGTCTCTAAATTTTCAGGGGATTGGAGTTAGTCCTTGGATGCAGCCGAGGTTTGATCCATCCATGCTGAATATGCAAACAGACATGTATCAAGCTGTGGCTGCRGCYGCACTTCAGGATCCTTCTAAACAGCATCCTTCTTCCTTACTTCAATTTCAGCAGCCACAGAACTTCCCAAACAGGACTRCTGCTTTAATGCATTCACAGATATTGCAGCAATCACCACCTCAGCAAGCTTTCCAAATTGATCAAGAGAATCAGTCACAAACTCCAACACATGTTCAACTGCGTCCACAGCACCAGAACTCATTCAATAACCAGCTTCACCATCACAACAACCAGCAACAGCAACAGCAACCACAGCAGATTTCCAATTCAGTGTCTACAATGTCTCAGTTTGTTTCAAGTTCAGCAACTCAGCCTCTCTCACCACCTGTGCAAGCTATCTCTTCCTTGTGCCAACAGCAAAGCTTTTCAGATTCAAATGGAAACCCTGTCACCACTGCTAATGTTTCTCCTCTGCATAGTATCTTGGGATCCTTTCCCCAGGACGAAGCATCTCAGCTTCTGAACCTCCCTAGAAGTAGCTCTTGGATTCCTGTTCAAACATCATCAGCAGCATGGCCGTCGAAGCGAGTTGCAGTGGATCCTCTCCTTTCTTCCGGAGCATCTCAGTGCATTCTGCCTCAGGTGGAGCTGCAGAGTAGTATTTCTCAAAATGCAGTTACATTGCCACCCTTTCCTGGGAGGGAGTGCACAATAGACCAAGAAGGAAGCACTGATCCACACAACCATCTTTTATTTGGTGTTAACATAGAGCCTTCAACTCTTCTTGTGCATAGCCATGGTGACTCTCCCACCATTCCCTTTCAAACTTCTAACTACATGAGTACTGCAGGTGCCGATTCTTCAGGCTTCCTGCATCCCTCAGAAAATATGCCCAACAAAACCTTCGTGAAGGTTTATAAGTCAGGGTCCTTCGGAAGATCACTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGCAGTGAACTAGCTCGCATGTTCGGCCTAGAAGGCGAGCTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGCGAGAACGACGTTCTTCTCCTCGGCGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATCAAGATACTTTCACCGCAAGAAGTGCAGCAAATGGGAAACTCCGGCCTAGAGCTCTTGAACTCAGTTCCGGTCCAAAGGCTCTCTAACAGTATCTGCGATGATTATGGGAGCCGAGACTCGAGAAGTTTAAGCACCGGGATAACCACGGTGGGATCATTAGACTACTGA 2577 0.4734 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGLKDEDFGMSSPLMWLRDADRGGLQSLNFQGIGVSPWMQPRFDPSMLNMQTDMYQAVAAAALQDPSKQHPSSLLQFQQPQNFPNRTXALMHSQILQQSPPQQAFQIDQENQSQTPTHVQLRPQHQNSFNNQLHHHNNQQQQQQPQQISNSVSTMSQFVSSSATQPLSPPVQAISSLCQQQSFSDSNGNPVTTANVSPLHSILGSFPQDEASQLLNLPRSSSWIPVQTSSAAWPSKRVAVDPLLSSGASQCILPQVELQSSISQNAVTLPPFPGRECTIDQEGSTDPHNHLLFGVNIEPSTLLVHSHGDSPTIPFQTSNYMSTAGADSSGFLHPSENMPNKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPVQRLSNSICDDYGSRDSRSLSTGITTVGSLDY* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0145 858 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Amo20g0145 858 MobiDBLite consensus disorder prediction 451 551 - -
Amo20g0145 858 SUPERFAMILY CAD & PB1 domains 719 801 - -
Amo20g0145 858 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 839 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo20g0145 858 SMART B3_2 127 229 IPR003340 GO:0003677
Amo20g0145 858 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo20g0145 858 MobiDBLite consensus disorder prediction 446 551 - -
Amo20g0145 858 MobiDBLite consensus disorder prediction 563 588 - -
Amo20g0145 858 Gene3D - 722 815 - -
Amo20g0145 858 ProSiteProfiles PB1 domain profile. 726 810 IPR000270 GO:0005515
Amo20g0145 858 Gene3D - 291 363 - -
Amo20g0145 858 Gene3D - 125 228 IPR015300 -
Amo20g0145 858 PANTHER AUXIN RESPONSE FACTOR 1 839 - -
Amo20g0145 858 CDD B3_DNA 126 227 IPR003340 GO:0003677
Amo20g0145 858 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Amo20g0145 858 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Amo20g0145 858 Pfam AUX/IAA family 723 811 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0145 Amo-Chr20 1712641 1718639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0145 1 480 B3 DNA Binding Superfamily AT1G30330 85.890 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo20g0145 AUX_IAA 3.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0145 - - gmx:100798719 1405.19