Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0140 ATGGAGCCTGTTCCACAAAAATGGAGAGGAATCTGTCAAAATGGAACTGCTTTCAACTCATCTCAGTGTAATAGAAAGATCATTGGAGCACGATATTACTTACAAGGTTATGAAAGTCAATATGGCCCTCTAAATGAAGAGGAAGACTACAAGTCAGCCCGTGACAAAGATGGGCATGGAACTCACACGGCCTCCATAGTCGCAGGCCGTGCGGTTCCAAGTGCCTCGGCCATTGGGGGCTTCGCCAACGGCACAGCCTCTGGCGGAGCCCCGATGGCCCGCATTGCCATATACAAAGCATGTTGGCCCATCAAAGGGCAATCAAAACATAAAGGCAATGTATGCATAGATATTGACCTTCTTAAGGCCATGGATGATGCCATTGGTGATGGAGTTGATGTCTTAAGCGCTTCCATTGGTTACAAAACACCAATTCCTTACAAGGATGATGTGATTGGTACGGCAGCATTACATGCAACAAAGAAGAACATTGTGGTGGTTTGTAGTGCTGGGAATAATGGTCCATTGCCTTCAAATTTGTCAAACATTGCACCATGGATCATCACTGTTGGTGCTAGTACTGTGGATCGTTCATTTGTTGCACCAATTATGCTACAAGGTGGCACAATTATTGAGGGTAGATCAATTACTCCAGTGCACATGCCAAACAGCTTCTACCCATTGGTGCTGGCAAGCCAAGTTGAACTTCCAGGCCTACCTACTAATGCTTCTGGATTCTGTTTGGACAACAGCCTTGATCCTAAAAAGGTCAAGGGGAAAATAGTTGTGTGCATGCGAGGGGAAGGAGAAAACATAAGAAAGGGATTGGAAGTTGAAAGATCTGGTGGTGTTGGTTTCATCCTAGGAAACAATGAACAACTTGGGAATACTCTATATTATGCCGCTTACTTCATTCCTTCTACTGTAGTTACCTATCAAAATGTCTTGAAACTCATTCAATACATCAATTCTTCTTCTAATCCAATAGCATATATTCTACCTGGAACAACTGTGTTGAATACCAGACCAGCACCCTTATTGGCCTCATTCTCTAGCAGGGGTCCAAATATAATTGACCCTAATATTCTCAAGCCTGACATAGTAGCTCCAGGAGTAGACATATTAGCAGCATGGACTGCAGAAGATGGGCCCACAAAAGTGACAAATCTAGATAAACGAGTTGTTAAGTACAACATCTTATCAGGAACTTCCATGGCTTGCCCTCATGTCTCTGCTGCTGCTATTCTTCTAAAAGCTATACACCCTACTTGGACCTCTGCTGCTATAAGGTCTGCTCTCATCACCACAGCTGGGACAACAGACAACACAGGAAATCCTTTAACTGACACAAATGGTGATCCTGCAACCCCATTTGCAATTGGTGCTGGACACTTCAACCCTGTAAAGGCAGCAGATCCTGGACTAGTTTATGATGCTTCTTACATGGACTACCTTCTCTATACTTGTAGCATTGGAGCGACTCAATACTTTCAAGTTACTTATAAATGTCCAAATTCAACATCATTGCCTGAACCAACAGATCTCAACCATCCATCCATACAAATCCACAGACTCAATGGAACTAAGAATATTAAGAGGACAGTCACCAATGTTGGTAAGAGCACCAGTGTTTACACGTTTACTGCTAAGTCATCAGAGGAGTTTTCCATCACAGCAACTCCAAATATTCTTGCATTCAATCATGTTGGACAGAAAATTAGCTTCAATATCACAGTGACAGCAAAGATGGGTCAGATTTCAAACAAGGATGGCCCAGCTAGATACTACTTTGGATGGTATGCTTGGACTAACAAGAATCATGTTGTAAGAAGCCAAGTTGCAGTGTCTTTTACCTAA 1857 0.4292 MEPVPQKWRGICQNGTAFNSSQCNRKIIGARYYLQGYESQYGPLNEEEDYKSARDKDGHGTHTASIVAGRAVPSASAIGGFANGTASGGAPMARIAIYKACWPIKGQSKHKGNVCIDIDLLKAMDDAIGDGVDVLSASIGYKTPIPYKDDVIGTAALHATKKNIVVVCSAGNNGPLPSNLSNIAPWIITVGASTVDRSFVAPIMLQGGTIIEGRSITPVHMPNSFYPLVLASQVELPGLPTNASGFCLDNSLDPKKVKGKIVVCMRGEGENIRKGLEVERSGGVGFILGNNEQLGNTLYYAAYFIPSTVVTYQNVLKLIQYINSSSNPIAYILPGTTVLNTRPAPLLASFSSRGPNIIDPNILKPDIVAPGVDILAAWTAEDGPTKVTNLDKRVVKYNILSGTSMACPHVSAAAILLKAIHPTWTSAAIRSALITTAGTTDNTGNPLTDTNGDPATPFAIGAGHFNPVKAADPGLVYDASYMDYLLYTCSIGATQYFQVTYKCPNSTSLPEPTDLNHPSIQIHRLNGTKNIKRTVTNVGKSTSVYTFTAKSSEEFSITATPNILAFNHVGQKISFNITVTAKMGQISNKDGPARYYFGWYAWTNKNHVVRSQVAVSFT* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0140 618 Gene3D - 196 339 - -
Amo20g0140 618 Pfam PA domain 227 317 IPR003137 -
Amo20g0140 618 Pfam Fibronectin type-III domain 514 615 IPR041469 -
Amo20g0140 618 ProSitePatterns Serine proteases, subtilase family, serine active site. 402 412 IPR023828 -
Amo20g0140 618 Pfam Subtilase family 35 463 IPR000209 GO:0006508|GO:0008236
Amo20g0140 618 CDD PA_subtilisin_like 208 332 - -
Amo20g0140 618 Gene3D - 489 617 - -
Amo20g0140 618 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 615 IPR045051 -
Amo20g0140 618 ProSiteProfiles Serine proteases, subtilase domain profile. 1 471 - -
Amo20g0140 618 SUPERFAMILY Subtilisin-like 19 475 IPR036852 GO:0004252|GO:0006508
Amo20g0140 618 CDD Peptidases_S8_3 1 437 IPR034197 -
Amo20g0140 618 Gene3D Peptidase S8/S53 domain 1 484 IPR036852 GO:0004252|GO:0006508
Amo20g0140 618 PRINTS Subtilisin serine protease family (S8) signature 55 68 IPR015500 -
Amo20g0140 618 PRINTS Subtilisin serine protease family (S8) signature 401 417 IPR015500 -
Amo20g0140 618 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.6 1 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0140 Amo-Chr20 1621487 1628439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0140 1 617 Subtilisin-like Serine Gene Family AT5G45650 55.233 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0140 - - ahf:112714383 1253.43