Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0109 ATGGAAAATGCTGGAAAGATGGAGGAGTATGAAGAAGAAACGGTAGATACTGAAACTGCTGATCCAAAGTCCTCTTCAAAACAGGTGGCCAATGGAGAACTTAATGATACTGCAAAGAGTGGGAGTAAGGCAAAAGAAGGAAAATCTGTCCTTATTAAACAGGAAGAACGGGAAACAGGTGTTGTCAGTATGAAAGTTTTAGCAAGATACAAGACTGCATTAGGAGGTCTTTGGGTGGTTGTAATACTCTTTGGATGCTATTTCTTAACAGAAGTGTTACGAATTTCAAGTAGCACATGGTTGAGCCATTGGACTGATCAGAGTGCTTCAGTGGGCTATGATCCTGGATTTTATAATCTGATATATGCAGCTCTATCATTTGCTCAGGTTATGGTGACTTTAACAAATTCTTATTGGTTGATCATATCAAGTCTATATGCAGCCAGAAGGTTGCATGAAGCCATGCTTCACTCCAAATTACGAGCTCCTATGGTTTTTTTTCATACAAATCCACTTGGAAGAGTAATCAACAGGTTTGCAAAGGATTTAGGTGACATTGATCGTAATGTTGCCCCATTTGTCAATATGTTTCTGGGTCAAGTGTCTCAGCTCCTTTCAACATTCGTCCTGATAGGGATTGTCAGCACAATGTCCTTGTGGGCGATAATGCCGTTGTTGGTACTGTTTTATGGAGCATATCTCTACTATCAGAGCACCGCCCGTGAAGTAAAGCGCTTAGATTCAATTAGTAGATCCCCTGTTTATGCACAATTTGGAGAAGCACTTAATGGTCTATCAACAATTCGTGCTTACAAGGCTTATGACCGCATGGCTGATATCAACGGAAAGTCCATGGACAACAACATACGATTCACTCTGGTGAACATGAGTGGAAATCGATGGCTTGCAATTCGATTGGAAACTCTGGGAGGTCTCATGATATGGTTTACTGCAACCTTTGCGGTAATGCAGAATGGGAGGGCCGAGAACCAGCAGGAATTTGCATCCACCATGGGTTTACTACTTAGTTATGCTTTGAACATTACCAGTTTGCTTACTGGTGTGCTCAGGCTTGCTAGTTTGGCTGAGAATAGTCTAAATGCTGTTGAGCGTGTAGGCACTTATATAGATTTGCCTTCAGAGGCACCATCCATCATTGAGGATAGTCGCCCCCCTCCAGGCTGGCCCTCATCTGGATCAATCAGATTTGAGGATGTTGTACTTCGATACAGGCCTGAACTTCCTCCTGTCCTTCATGGCTTGAATTTCACAATTTTTCCAAGCGATAAGGTTGGCATTGTAGGAAGGACAGGAGCTGGAAAATCTAGCATGCTTAATGCTTTATTTCGAATTGTGGAATTGGAAAGAGGAAGAATATTAATTGATGATTGTGATATTGCAAAGTTTGGGCTGGCTGATTTGCGTAAAGTTCTTGGCATTATACCACAGTCCCCTGTTTTGTTTTCAGGAACTGTAAGATTTAATCTTGACCCTTTTAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTCTGGGGCTGGATGCTGAGGTCTCTGAGGCAGGCGAGAACTTCAGTGTTGGGCAGAGGCAACTGTTGAGTCTCTCTCGGGCATTATTGCGTAGATCAAAGATATTAGTACTTGACGAAGCCACTGCAGCAGTAGATGTTAGAACAGATGCCCTCATACAGAAAACAATTCGAGAGGAATTTAAATCGTGCACCATGCTCATCATTGCTCATCGTCTTAACACCATCATAGACTGTGATCGGATTCTTTTGCTTGATGGTGGTAAGGTTCTTGAATATGATACCCCTGAAGAACTGCTATCAAATGAAGGCAGTTCGTTCTCTAAGATGGTGCAAAGTACAGGAGCCGCAAATGCCCAATATCTACGCAGCTTAGCACTCGGGAGTAAGTCAGATAGGGAAGAGAGTAAGCATAATGATGGCCAGAAAAAATGGCTTGCTTCGTCTCGCTGGGCTGCTGCAGCTCAATTTGCCCTTGCCGTCAGTCTCACCTCATCACAGAATGACCTAAAAAGATTGGAAGTGGAAGAAGAGAATAGCATACTCAAGAAAACAAGGGATGCTGTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAGAGAAATCGAGGAATCTTTAGACCGATACCAAATATCCTCACAGTTGGTGGTCATCACTCTACAAGATGATTGA 2247 0.4295 MENAGKMEEYEEETVDTETADPKSSSKQVANGELNDTAKSGSKAKEGKSVLIKQEERETGVVSMKVLARYKTALGGLWVVVILFGCYFLTEVLRISSSTWLSHWTDQSASVGYDPGFYNLIYAALSFAQVMVTLTNSYWLIISSLYAARRLHEAMLHSKLRAPMVFFHTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFVLIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNMSGNRWLAIRLETLGGLMIWFTATFAVMQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGTYIDLPSEAPSIIEDSRPPPGWPSSGSIRFEDVVLRYRPELPPVLHGLNFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLALGSKSDREESKHNDGQKKWLASSRWAAAAQFALAVSLTSSQNDLKRLEVEEENSILKKTRDAVITLQGVLERKHDREIEESLDRYQISSQLVVITLQDD* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0109 748 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 654 - -
Amo20g0109 748 SMART AAA_5 427 620 IPR003593 -
Amo20g0109 748 MobiDBLite consensus disorder prediction 1 42 - -
Amo20g0109 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 627 IPR027417 -
Amo20g0109 748 ProSitePatterns ABC transporters family signature. 538 552 IPR017871 GO:0005524
Amo20g0109 748 MobiDBLite consensus disorder prediction 21 38 - -
Amo20g0109 748 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 401 635 IPR003439 GO:0005524
Amo20g0109 748 CDD ABCC_MRP_domain2 399 619 - -
Amo20g0109 748 Pfam ABC transporter 418 566 IPR003439 GO:0005524
Amo20g0109 748 Pfam ABC transporter transmembrane region 81 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g0109 748 Gene3D ABC transporter type 1, transmembrane domain 43 382 IPR036640 GO:0005524|GO:0016021
Amo20g0109 748 CDD ABC_6TM_ABCC_D2 80 376 IPR044726 GO:0140359
Amo20g0109 748 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 1 654 - -
Amo20g0109 748 SUPERFAMILY ABC transporter transmembrane region 77 381 IPR036640 GO:0005524|GO:0016021
Amo20g0109 748 Gene3D - 384 637 IPR027417 -
Amo20g0109 748 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 81 364 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0109 Amo-Chr20 1288161 1310333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0109 398 641 Calmodulin-binding Proteins AT2G36910 31.600 1.70e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0109 - - gmx:100801762 1256.51