Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0108 ATGGCTTTTGAGCCATTGGATTGGTATTGTCAGCCAGTTGCAAATGGAGTATGGACCACAACAGTTGACAATGCCTTTGGAGCTTACACTCCTTGCGCGGTTGATTCTTTGGTGATCTCCGTTTCTCATTTGGTGCTTCTAGGCCTGTGTGTCTACCGGATATGGTTGATTAAGAAGGATTTCAAAGCCAAAAGGTTCTGCTTACGGTCAAAACTCTATAATTATTTGCTTGGGTTGTTAGCTTTGTATTGTGTGGCCGAGCCCTTATATAGATTGATTGCTGGACTATCAATTCTAAATTTAGATGGTCAGACTCAACTTGCTCCATTTGAGATCACTTCACTGGTCATTGAAGTTCTTACTTGGGGTGCTATGCTGATTTTGATTGGCGTTGAGACTAAAGTTTACATTTACGAATTCAGATGGTTTATCCGATTTGGTTTGCTTTATTCTATTGTCGGGGATACTGTCATGCTCAACCTTATCATTTCTGTGCAGGAGTTGTATAGCAGGTCAGTGCTGTATTTGTACATAAGCGAGGTGGTCTGCCAGGCTTTGTTTGGGCTACTTTTGCTTGTGTATATACCTACTTTGGATCCTTATCCGGGTTATACCCCTGTTCGGAGTGACTTGGTTGTTGATACTGCATATGAAGAACTGCACGGAGGAGAGCAGATATGTCCTGAAAGGCATGCAAACATATTGTCAAGAATCCTTTTTTCTTGGATGAATCCTATCATGAATCTAGGATATCAAAGACCCCTTACAGAGAAAGATATATGGAAGTTAGATACATGGGATCGGACTGAGACACTGAATGAAAAGTTCCAGAGATGTTGGGTAGAAGAATCTCGGAGGTCGAAACCTTGGCTTTTAAGAGCATTGAATGCAAGCCTTGGTGGGAGGTTTTGGTGGGGAGGATTTTGGAAGATTGGAAATGATCTCTCCCAGTTTTTGGGCCCACTAATATTGAATCAGCTGCTAGAGTCTATGCAAAATGGTGATCCAGCCTGGATTGGATACGTTTTTGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGATTCCGGCTAAGATCAACACTGGTAGCTGCTGTATTTCGCAAATCATTAAGGCTTACCCATGAAGCTCGAAAGCAATTTGCATCTGGAAAAATAACCAACTTGATGACTACTGATGCCGAAGCACTTCAGCAAATATGCCAGTCACTTCATACTTTGTGGTCAGCTCCGTTCCGCATTACCATTGCCATGGTTCTTCTTTATCAACAACTAGGTGTTGCTTCCCTTTTGGGCGCTTTGATGCTAGTCCTTATGTTTCCATTACAGACATTTATCATCAGTAGAATGCAGAAGTTGTCTAAGGAAGGATTACAACGTACAGACAAGAGAATTGGCCTTATGAATGAAGTTTTGGCAGCTATGGACACTGTAAAATGTTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTTCAGAATGTCCGAGATGATGAATTATCATGGTTTCGAAAAGCATCATTACTTGGAGCGTTAAATGGATTCATACTGAATAGTATTCCAGTTTTTGTAACTGTGATTTCATTTGGAATGTTCACCTTACTTGGAGGGAATTTGACACCCGCAAGAGCTTTTACATCACTTTCTCTGTTTGCTGTGCTTCGGTTTCCTCTCTTCATGCTTCCTAATATTATAACTCAGGCGGTTAATGCAAATGTATCATTGAAGCGTTTGGAGGATTTGCTCTTAGCAGAAGAGAGAATACTTTTACCAAATCCACCGCTTGAGCCAGGATTACCAGCCATCTCAATCAAAAACGGAAACTTCTCCTGGGATTCCAAGGCAGAAAGGCCTACATTGGCAAACATAAACTTGGATATACCTGTTGGTAGCCTAGTTGCAGTTGTTGGAAGTACAGGAGAAGGGAAAACATCACTAGTATCTGCAATGCTTGGAGAACTTCCTGCAGTTGTAGGTTCAACTGTTGTTATGAGAGGGACAGTTGCTTATGTACCCCAAGTCTCTTGGATTTTTAATGCAACTGTGCGGGATAATGTTTTATTTGGTTCTGCCTTTGACCCAATAAGATATGAAAGGGCAATAGATGTGACTGAACTACGACATGACCTTGAGTTACTGCCTGGTGGTGATCTTACCAAAATTGGAGAAAGAGGTGTGAACATCAGTGGTGGTCAAAAGCAAAGAGTATCCATGGCTAGAGCTGTTTACTCCAAATCCGAGTGTACATTTTTGATGATACCCTTAGTGCTCTAG 2313 0.415 MAFEPLDWYCQPVANGVWTTTVDNAFGAYTPCAVDSLVISVSHLVLLGLCVYRIWLIKKDFKAKRFCLRSKLYNYLLGLLALYCVAEPLYRLIAGLSILNLDGQTQLAPFEITSLVIEVLTWGAMLILIGVETKVYIYEFRWFIRFGLLYSIVGDTVMLNLIISVQELYSRSVLYLYISEVVCQALFGLLLLVYIPTLDPYPGYTPVRSDLVVDTAYEELHGGEQICPERHANILSRILFSWMNPIMNLGYQRPLTEKDIWKLDTWDRTETLNEKFQRCWVEESRRSKPWLLRALNASLGGRFWWGGFWKIGNDLSQFLGPLILNQLLESMQNGDPAWIGYVFAFSIFVGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTTDAEALQQICQSLHTLWSAPFRITIAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKLSKEGLQRTDKRIGLMNEVLAAMDTVKCYAWESSFQSKVQNVRDDELSWFRKASLLGALNGFILNSIPVFVTVISFGMFTLLGGNLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNANVSLKRLEDLLLAEERILLPNPPLEPGLPAISIKNGNFSWDSKAERPTLANINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPAVVGSTVVMRGTVAYVPQVSWIFNATVRDNVLFGSAFDPIRYERAIDVTELRHDLELLPGGDLTKIGERGVNISGGQKQRVSMARAVYSKSECTFLMIPLVL* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0108 770 Pfam ABC transporter transmembrane region 307 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g0108 770 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Amo20g0108 770 Pfam ABC transporter 633 761 IPR003439 GO:0005524
Amo20g0108 770 PANTHER ABC TRANSPORTER C FAMILY MEMBER 1 32 768 - -
Amo20g0108 770 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g0108 770 Gene3D - 610 765 IPR027417 -
Amo20g0108 770 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 32 768 - -
Amo20g0108 770 Gene3D ABC transporter type 1, transmembrane domain 277 601 IPR036640 GO:0005524|GO:0016021
Amo20g0108 770 SUPERFAMILY ABC transporter transmembrane region 289 595 IPR036640 GO:0005524|GO:0016021
Amo20g0108 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 763 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0108 Amo-Chr20 1279993 1287444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0108 595 764 Calmodulin-binding Proteins AT2G36910 27.660 7.70e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0108 - - gmx:100795004 1313.9