Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0098 ATGCGGAGAAATTGCAACTTGGAACTTGGGCTCTTTCCTCCCTATGATTCCGGGAGCCCAAAGCAAGAAGAAAGGCAAAGCCAGCCACGCCAGATTACAATTTTCTATGACGGAAAGATTTGTGTTTCTGATGTCACAGAGCTTCAGGCCAAATCAATCTTAATGCTTGCAAATAAAAAAGCCAATATTATTAGGACACCAACAACGGTATCATCATCATCGGAGCCATCTTCATCCTCGTCGCCGCCGCCACCACCACCATTATTGAATAGTAATAATCAACAAGTGTATAACACTACTACTGCTGGCACTGGACTTTCCATGAAAAGATCGCTGCAAAGGTTCCTACAGAAGAGAAAGAATCGAATCCAAGAAGCTTCCCCTTACCACCATCACTAG 399 0.4386 MRRNCNLELGLFPPYDSGSPKQEERQSQPRQITIFYDGKICVSDVTELQAKSILMLANKKANIIRTPTTVSSSSEPSSSSSPPPPPPLLNSNNQQVYNTTTAGTGLSMKRSLQRFLQKRKNRIQEASPYHHH* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0098 132 Pfam Jas motif 109 129 IPR018467 -
Amo20g0098 132 SMART tify_2 25 59 IPR010399 -
Amo20g0098 132 MobiDBLite consensus disorder prediction 67 108 - -
Amo20g0098 132 PANTHER - 1 131 - -
Amo20g0098 132 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 131 IPR040390 -
Amo20g0098 132 MobiDBLite consensus disorder prediction 91 108 - -
Amo20g0098 132 Pfam tify domain 27 58 IPR010399 -
Amo20g0098 132 MobiDBLite consensus disorder prediction 1 29 - -
Amo20g0098 132 ProSiteProfiles Tify domain profile. 25 59 IPR010399 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0098 1 130 Tify Gene Family AT1G30135 38.356 6.95e-21 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo20g0098 tify 5.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0098 - - gmx:100803886 134.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0098 20 1174928 1177678 Amo20g0098 20 1174928 1177678 ECH