Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0082 ATGTCGCTTTCCTGTGCCAAGAACTTCTTCCAGAGGTTCTGGATGGATGAATTCCAAATGCCAAGTTTCTCACACAGCAGCTTCTTGAACAATGACCTCTTACCATCTCTTGGAGCAAGAATAAACCAGGAAACTCGCCTTCGAAAATACATAGTTTCGCCTTTCAACCCACGTTATAGGTACCGGTACCAGTACCTTATGTCTTCCATTCCAATCCAATCCAATCGAATTCGAGAGGCTTGGGAGATGTTACTGGTTGTTCTAGTGGTTTACTCAGCCTGGATTTGTCCCTTTGAGTTCGCTTTTCTGACTTACAAGCAAGACACGCTATTCATCATAGATAACATAGTGAATGGCTTCTTCGCAGTTGACATCATCCTCACATTCTTCGTGGCATACTTAGACAGCCACTCATATCTTCTGGTTGATGATCCAAAGAAAATTGCAATCAGGTACATATCTACCTGGTTTGCCTTTGATGTATGCTCCACAGCACCCTTCCAGCCAATCACCCTCCTCTTCACAAACCACAGCAGTGAGATTGGTTTCAAAGTCCTTAACATGCTTCGATTATGGAGGCTCAGACGAGTCAGCTCTCTTTTTGCCAGACTCGAAAAGGACATTCGCTTCAACTACTTCTGGACAAGGTGCACAAAGCTTATTGCTGTAACATTGTTTGCAGTCCATTGTGCCGGCTGCTTCAACTATCTGATTGCAGATAAGTACCCGGATTCAAAGAGAACCTGGATTGGCGCCACGTACCCGGATTTCAAAGAAGAAAGCCTCTGGGACAGATATGTGACTGCAATGTACTGGTCCATTGTCACTCTTACAACCACCGGCTATGGAGATTTGCATGCAGAGAACACCAGAGAGATGCTGTTTGATATCTTCTACATGCTCTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACCAACCTAGTTGTTCACTGGACCAGCCGCACCAGAAACTTTAGAGATACAGTGAGAGCAGCCACTGAATTCGCTTCCAGAAACCATCTTCCACCACGGATACAGGATCAGATGTTGTCACACATATGCTTGAAGTTCAAGACAGAAGCATTGAAGCAGCAAGAAACTCTGAATGATCTGCCAAGGGCGATTCGTTCAAGCATTGCACACCATCTGTTCTTTCCAGTTGTGCAAAGGGTCTACCTCTTCAAAGGAGTCTCCCATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCTGAGTATTTCCCACCCGGGGAAGATGTGGTACTGCAAACCGAATCATCTACAGACTTGTACGTTCTGGTTTCAGGGGCAGTGGATCTTGTTCAATACGTGGATGGCCAAGAACAACTCTTTAGGAAAGTATTTGCAGTAGATACGTTTGGTGAGATTGGTGCATTATATCATGTACCTCAGCCTTTCACAGTTCGGACCACAGAGCTTTCTCAAATTCTAAGACTCAACAGAACATCACTCACCAATGTTTTGCATGCAAATCCCAGAGATGCACAGATCATAACGGATAACCTCTTCATGAGGTCAAAGGGGCATCAAGAGCCAGGCTTGGAATATCCGAGTGCGGATCCTAGATTGTTTCTTCAGAAACTGCTTCACGGAGGCAACAAAAGAGGCAGATTTTCCCGCACATGTACGGCTTCTGAGGCCAATTTGCAGGATGATCATCATTCAATCAGTGCTGAAGATGGAAAAAGAGATGATCAAGACATGGTTGAAATTCTGCTTGAGAGAGACGCAAATGCAAATACCCCAAAAGTTCCAGTGCAACAGCTCAAAAGCAAGAGCATCTCTGACCAAATAGTGACTTGTGAAAAAGAGATGAAATCTTCAGGAGAATATAGAATACAGGTTGTGGAGCCAGAAATACTTAACCTTGATAGGAATGACTCAACCATGAACAAAAGAAAAGATGCTTCTGGGTTCATGAAGAAGAGAGTCACAATCCACTTGCTAAGCGGGTGCAAAACTAACCCACAGGGACAGTACGGAAAGTTGATCATCCTTCCTGAATCATTGGAAGAGCTGCTCAACATTGCTGTAATGAATGCCTTTACAACCAGAAGTGCTCTCGCTCAGCCAAAAGAGATGCCTGGGTAA 2121 0.4422 MSLSCAKNFFQRFWMDEFQMPSFSHSSFLNNDLLPSLGARINQETRLRKYIVSPFNPRYRYRYQYLMSSIPIQSNRIREAWEMLLVVLVVYSAWICPFEFAFLTYKQDTLFIIDNIVNGFFAVDIILTFFVAYLDSHSYLLVDDPKKIAIRYISTWFAFDVCSTAPFQPITLLFTNHSSEIGFKVLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYLIADKYPDSKRTWIGATYPDFKEESLWDRYVTAMYWSIVTLTTTGYGDLHAENTREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAATEFASRNHLPPRIQDQMLSHICLKFKTEALKQQETLNDLPRAIRSSIAHHLFFPVVQRVYLFKGVSHDFLFQLVSEMEAEYFPPGEDVVLQTESSTDLYVLVSGAVDLVQYVDGQEQLFRKVFAVDTFGEIGALYHVPQPFTVRTTELSQILRLNRTSLTNVLHANPRDAQIITDNLFMRSKGHQEPGLEYPSADPRLFLQKLLHGGNKRGRFSRTCTASEANLQDDHHSISAEDGKRDDQDMVEILLERDANANTPKVPVQQLKSKSISDQIVTCEKEMKSSGEYRIQVVEPEILNLDRNDSTMNKRKDASGFMKKRVTIHLLSGCKTNPQGQYGKLIILPESLEELLNIAVMNAFTTRSALAQPKEMPG* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0082 706 PANTHER POTASSIUM CHANNEL AKT1 646 688 IPR045319 GO:0005249|GO:0006813
Amo20g0082 706 CDD CAP_ED 396 508 IPR000595 -
Amo20g0082 706 Pfam Cyclic nucleotide-binding domain 415 499 IPR000595 -
Amo20g0082 706 Gene3D - 79 319 - -
Amo20g0082 706 SMART cnmp_10 396 513 IPR000595 -
Amo20g0082 706 SUPERFAMILY cAMP-binding domain-like 323 512 IPR018490 -
Amo20g0082 706 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 646 688 - -
Amo20g0082 706 Pfam Ion transport protein 80 325 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo20g0082 706 ProSiteProfiles cAMP/cGMP binding motif profile. 396 515 IPR000595 -
Amo20g0082 706 PANTHER POTASSIUM CHANNEL AKT1 1 556 IPR045319 GO:0005249|GO:0006813
Amo20g0082 706 PANTHER POTASSIUM CHANNEL AKT1 570 646 IPR045319 GO:0005249|GO:0006813
Amo20g0082 706 SUPERFAMILY Voltage-gated potassium channels 74 319 - -
Amo20g0082 706 PRINTS EAG/ELK/ERG potassium channel family signature 292 303 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo20g0082 706 PRINTS EAG/ELK/ERG potassium channel family signature 125 134 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo20g0082 706 PRINTS EAG/ELK/ERG potassium channel family signature 310 319 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo20g0082 706 PRINTS EAG/ELK/ERG potassium channel family signature 91 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo20g0082 706 PRINTS EAG/ELK/ERG potassium channel family signature 266 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo20g0082 706 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo20g0082 706 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 556 - -
Amo20g0082 706 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 570 646 - -
Amo20g0082 706 Gene3D Jelly Rolls 363 522 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0082 Amo-Chr20 1093451 1096692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0082 1 687 Ion Channels AT5G46240 59.825 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0082 K21867 - gmx:100783528 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0082 20 1093451 1096692 Amo20g0082 20 1093451 1096692 ECH