Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0076 ATGGAGCGGTACGGCCGGTCCAGCGAGGGTTCCCGGTCTGATCCATCGCCGGAGTGGACCGGAACTGGCCTCGAAGAGCCGGTGTGGCAAATGGGATTGGGTGCTGCAGAGGAATCTTATCCCCAAAGGCCTGATGAGGCTGATTGTATCTACTATTTGAGGACTGGATTCTGTGGCTATGGTTCCCGCTGCCGTTTCAACCATCCCCGTGACCGTGCCGCGGCTGTTGGTGCTGCTGCTAGGACTGGAGGAGGGGAGTATCCAGAGCGAATTGGCCAGCCTTTGTGCCAGTATTACATGAAGACAGGGTCATGCAAATTTGGTTCTTCCTGCAAGTACAATCATCCTAGGCAGGCTGGAGGCTCTGCTAGCCCTGTGTCACTAAATTATTATGGTTATCCATTGCGACCGGGTGAGAAAGAATGTTCCTATTATGTGAAAACTGGGAGATGCAAGTTTGGTGGAACTTGTAAATTCCATCATCCCCAGCCTGCTGGCATCCAAGTTCCAGCATCATCACTGGTTCCTCCAGTTTCACCTTTACCTGTACCAGTACCTTCACCGTTATATCAATCTGTACAGCCTCCATCTGGTCCTTCATCTCAACAAATTGGTGTACTGGTTGCAAGACCACCGCTTTTACCTGGTTCACTAGTCCACAGCCCTTACGGTCCTGTGGTTCTGTCCCCTGCCATGGTCCCTTTTTCTGGCTGGGGTCCATATCAGGCTCCTGCAGCAAGCCCCGTCCTTCCTTCTAGTACTCCATCTAATGTTGGGTCAGCACAGCTTTATGGGATAACTCAGGTGCCTTCATCACCAGCTGCCTATGCTGGACCTTATCAACCTTCCGGTTCTTCTCTTGGTCTTTCAGGCGGTAGTCAGAAAGAGCAGTCATTGCCAGAAAGGCCTGATCAGCCAGAATGTCAGCATTACTTAAAGACAGGGGAGTGTAAATTCGGTCCATTATGTAGGTATCACCATCCACCAGACATGAGTGCACCGAAAGGGAATGTAATTCTTAGTCCTGCTGGCCTTCCGTTACGTCCGGGGGCATCACCTTGCACACATTACACACAGCGTGGAGTATGTAAGTTCGGTTCTGCATGCAGATTTGATCATCCTATGGGATCATTGAGTTATAGTCCATCCACATCATCCCTGGCTGACATGCCGGTTGCACCCTATCCTGTTGGTTCTTCGGTTGGTACACTTGCTCTGTCATCTTCAACATCAGAGTTGCGGCCCGAGCTCACCTTAGGATCCATCAAGGAGTCTGTTTCATCTCGGATACCATCTTCAATGAACACATTAACCGGATCAGTCGGCTTGACTTTGTCAACGGGTGAACCTGTTTCTCAATCAAGCAGTCAACCATCTGCTCAGAGTTCCAGTACATCAGCAGCTGCTGATACTGCCACAACTAGTACTGTCTCTTGCACCACCTCAAGCTCGAGCTAA 1458 0.5048 MERYGRSSEGSRSDPSPEWTGTGLEEPVWQMGLGAAEESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRAAAVGAAARTGGGEYPERIGQPLCQYYMKTGSCKFGSSCKYNHPRQAGGSASPVSLNYYGYPLRPGEKECSYYVKTGRCKFGGTCKFHHPQPAGIQVPASSLVPPVSPLPVPVPSPLYQSVQPPSGPSSQQIGVLVARPPLLPGSLVHSPYGPVVLSPAMVPFSGWGPYQAPAASPVLPSSTPSNVGSAQLYGITQVPSSPAAYAGPYQPSGSSLGLSGGSQKEQSLPERPDQPECQHYLKTGECKFGPLCRYHHPPDMSAPKGNVILSPAGLPLRPGASPCTHYTQRGVCKFGSACRFDHPMGSLSYSPSTSSLADMPVAPYPVGSSVGTLALSSSTSELRPELTLGSIKESVSSRIPSSMNTLTGSVGLTLSTGEPVSQSSSQPSAQSSSTSAAADTATTSTVSCTTSSSS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0076 485 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Amo20g0076 485 Gene3D - 121 172 - -
Amo20g0076 485 Gene3D - 291 375 - -
Amo20g0076 485 MobiDBLite consensus disorder prediction 440 485 - -
Amo20g0076 485 SUPERFAMILY CCCH zinc finger 45 72 IPR036855 GO:0046872
Amo20g0076 485 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 468 - -
Amo20g0076 485 SUPERFAMILY CCCH zinc finger 138 164 IPR036855 GO:0046872
Amo20g0076 485 SUPERFAMILY CCCH zinc finger 351 378 IPR036855 GO:0046872
Amo20g0076 485 MobiDBLite consensus disorder prediction 275 304 - -
Amo20g0076 485 PANTHER PROTEIN PHOSPHATASE RELATED 1 468 - -
Amo20g0076 485 MobiDBLite consensus disorder prediction 1 24 - -
Amo20g0076 485 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Amo20g0076 485 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Amo20g0076 485 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Amo20g0076 485 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Amo20g0076 485 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Amo20g0076 485 MobiDBLite consensus disorder prediction 283 299 - -
Amo20g0076 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Amo20g0076 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Amo20g0076 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Amo20g0076 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Amo20g0076 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 375 IPR000571 GO:0046872
Amo20g0076 485 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Amo20g0076 485 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Amo20g0076 485 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Amo20g0076 485 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Amo20g0076 485 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Amo20g0076 485 Gene3D - 41 120 - -
Amo20g0076 485 SUPERFAMILY CCCH zinc finger 306 330 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0076 Amo-Chr20 997798 1004369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0076 1 450 C2H2 Transcription Factor Family AT5G18550 54.624 3.00e-151 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo20g0076 zf-CCCH 5.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0076 - - gmx:100789405 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3501 01 107656105 107660578 Amo20g0076 20 997798 1004369 PCT
Amo11g2666 11 134852289 134856702 Amo20g0076 20 997798 1004369 PCT
Amo20g0076 20 997798 1004369 Amo01g3501 01 107656105 107660578 PCT
Amo20g0076 20 997798 1004369 Amo11g2666 11 134852289 134856702 PCT