Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0064 ATGTCCACCTCCTCTGGAACCTCACAGACTTACCTCAAAGGACATGAAGAACACATGAATAATTCTTCATTATCAACTCTTATTATTCTACAACGCAACACTTCATCTTCTTGTGGCACTGAGAGAAGAGGTAGAAGAAAGCAGCAATCAGCAGAACCAGGAAGATTTCTTGGTGTGAGAAGACGGCCATGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAGAGACACTGGCTTGGAACCTTTGACACTGCTCATGAAGCTGCTCTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTGGCTTAGCAAGAACAAACTTCATCTACACAACCACACAAAACAACACCATCAATGGTAATAATCTTCTCAACTCTATGGATAATAATCCTCATCATCATCATCAACAAGTTATTTTGCCACCTTCACAAGATTATTTCCTCAACAACACTCATCAGAATTGCATCATGTCTCACCAACTTGATGATGATATTACTTCCCTTGTCCACGATGAGAACCCTTCAAAGTTGGTGATGAAGGGCGATGAGAATTTGTTCTTCTTCTCAGCCACTGATTCCACAAATTCTGGCTATCTGGAATGCATTGTTCCAGAGAACTGTTTCAGACCTATTTCTTCTAGTACTCCCACCAACAACAATAATACCTCAAACTCCTCCATGAGTGCTGCTTCAGCTCCTAGTGACCAAAATGTTGTTAGCAGCATTAACACAAACACCATGGAGGCATTGAAGCATTACTATGGTGGTGAAGAACTTGACGGTCAAGGAATATTCTGGAACAATCAGGATGAGCAACAATCATCTTGGGATTGCAATAATAAGAGTAATAATTATGGTGAACTTTCAGCTATATTTGACAAACAAGAAGGTTGCATGATGAATGCATTGTGTCCCATCATGAATGAGACTAGTCCAAGCTATGGAGTAGTAGTGACTACTCGTGAGGCTGCTATTCCTATTCCTTCAACTACTTCTCCATCAATTCCTTCTTTGGGGGATGTCTACTTAGGAATGACCTACTCGCTCTTCTAG 1062 0.4124 MSTSSGTSQTYLKGHEEHMNNSSLSTLIILQRNTSSSCGTERRGRRKQQSAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSIKGGLARTNFIYTTTQNNTINGNNLLNSMDNNPHHHHQQVILPPSQDYFLNNTHQNCIMSHQLDDDITSLVHDENPSKLVMKGDENLFFFSATDSTNSGYLECIVPENCFRPISSSTPTNNNNTSNSSMSAASAPSDQNVVSSINTNTMEALKHYYGGEELDGQGIFWNNQDEQQSSWDCNNKSNNYGELSAIFDKQEGCMMNALCPIMNETSPSYGVVVTTREAAIPIPSTTSPSIPSLGDVYLGMTYSLF* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0064 353 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Amo20g0064 353 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Amo20g0064 353 MobiDBLite consensus disorder prediction 216 239 - -
Amo20g0064 353 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 349 - -
Amo20g0064 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 1 349 - -
Amo20g0064 353 MobiDBLite consensus disorder prediction 34 56 - -
Amo20g0064 353 SUPERFAMILY DNA-binding domain 56 112 IPR016177 GO:0003677
Amo20g0064 353 CDD AP2 55 111 IPR001471 GO:0003700|GO:0006355
Amo20g0064 353 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Amo20g0064 353 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Amo20g0064 353 Pfam AP2 domain 58 104 IPR001471 GO:0003700|GO:0006355
Amo20g0064 353 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0064 Amo-Chr20 735952 737013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0064 27 303 AP2-EREBP Transcription Factor Family AT5G18560 39.252 4.67e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo20g0064 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0064 - - adu:107468049 613.994