Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0050 ATGAACATAAAAAAGGGTGAGATTGAGAAGGTGAATTGGAAGAATTTGAGTTACAGTGAATTTGTTGAGAGATTCATGCAAAAAAACCAACCTTTGTTGCTCAATGGATTCTCGGAACATCACAATTGGAGAGCTTCAGTTGATTGGGTCACCCCTCTTGGCCACCCCAATTTTCAATTTTTCTCCACAAATTTTGGGAATTCCAAAGTTCAGGTTGCAGATTGTGACACAAGAGAGTTCACCGATCAGAAAAGGGAGGAGATGCTTGTTTTGGAGTTTATAGGACGTTGCCTTCAAGATGTTGAAGGTTCTGCAGTCCAATGTAGCAGTAATCACTCTGTACCATATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCAGAATATGTAGCTTATAAAACTCCAATGTTCTTTTGTGATGATTGGCTTAACCTGTATCTTGACAACTACAGAATGCATACTGATTCTGACACATACCAAGAAAATAACGAAATATGTTGCTCTGACTATCGTTTCGTATACATGGGAGTTAAAGGATCTTGGACTCCTCTTCATGCCGATGTTTTCCGGTCATATAGCTGGTCGGCAAATGTTTGCGGAAAAAAGAGATGGCTTTTTCTAGATCCTTCCCAACATCATCTTGTATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATTTCCTGGTTTCAAAAAGGCTATCTGGTTAGAATGCATGCAAGAAGCAGGTGAAATTATATTTGTTCCCAGTGGATGGTACCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAACTGGTTCAATGCGTATAACCTTTCATGGGTGTGGAATTTACTTTTGAGGGACTACAATGAGGCCAAAGAATACATAGAAGACATCAAGGATGTATGTGAGGATTTCGAAGGTCTTTGCCAGCGCAATCTTGCTGCTAACACGGGGATGAACTTTTATGACTTCTTTACTTTCATATCACGCTTCACCTTGGCCAACATTGTCTTGCTTTGTTATATAAATGGAAGACATGGAAATATCACTCAAATCTCATCAACAATAGCTCAGCATTTATTGATGAATCTTGGATCCATAAGGAAGGTTGCATCGGAGATGAAAGACAGGCATGCTCTAAAAGGAAATCAGGATCGCGCTGTGGACATTATAGAAACACTTGAAGATCCTAGGTTTTGCAAATTGTGCATGGATATAGGAAGAACATATGCAATGATACATGAAGAGTCTCATTTGTCCTTTGATTTCGAGAGCGCTTCGGCTGGTGAAATAGCGGATCTCACTGTTTTGAAAGCATACACTTCATCTGAGTTCTACACACCTGAAGATCTTGTTGAATTTATAGACAATGCTGTTGCAGAACATGGTGACTGTTACATCAACTCATCTGTAATATGA 1440 0.3847 MNIKKGEIEKVNWKNLSYSEFVERFMQKNQPLLLNGFSEHHNWRASVDWVTPLGHPNFQFFSTNFGNSKVQVADCDTREFTDQKREEMLVLEFIGRCLQDVEGSAVQCSSNHSVPYLKDWHFVKEYPEYVAYKTPMFFCDDWLNLYLDNYRMHTDSDTYQENNEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQHHLVFDRNMKNCVYNIFDEVSDSKFPGFKKAIWLECMQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDVCEDFEGLCQRNLAANTGMNFYDFFTFISRFTLANIVLLCYINGRHGNITQISSTIAQHLLMNLGSIRKVASEMKDRHALKGNQDRAVDIIETLEDPRFCKLCMDIGRTYAMIHEESHLSFDFESASAGEIADLTVLKAYTSSEFYTPEDLVEFIDNAVAEHGDCYINSSVI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0050 479 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 5 468 - -
Amo20g0050 479 Gene3D Cupin 2 279 - -
Amo20g0050 479 ProSiteProfiles JmjC domain profile. 123 295 IPR003347 -
Amo20g0050 479 SUPERFAMILY Clavaminate synthase-like 17 306 - -
Amo20g0050 479 Pfam Cupin-like domain 20 278 IPR041667 -
Amo20g0050 479 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 5 468 - -
Amo20g0050 479 SMART cupin_9 115 295 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0050 Amo-Chr20 489212 493774 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0050 6 287 Glycosyltransferase AT1G78280 21.886 2.88e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo20g0050 Cupin_8 5.1e-19 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0050 - - aip:107632417 889.412