Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0037 ATGGCTGAGAGTGGATATGAATTGTCGGATGAAGAAGCCGATGAGTATCGAGATGTATTGCAGTTGAGTAAGGAAGATATAATGAACAAGGCATTCCGTAGCGATGAAGCAGCATATGAATTTTACAGGAGGTTAGGCAAATGTTTTGGTTTTGGTATTCGAAAGGGTGACTCGGGAAAAGATGACAGTGGAAGGGTTATTCGTCGTAGATTTTTTTGTAATAGAGCGGGCCTGAGAGAACGTCGTCACTATGATAGGCTAGATAGGCAGAGAAGTCATAAACCGGAAACGCGGACAAATTGTGAGGCAAAGTTGTCAGTCTACCTTGATGTGGTCAGTGGTATATGGAGGGTGAGAAAAATAGTATTGGATCATAACCACGATTTAACTCCGACATATATGGTTCATATGATGACGAATTTTAGAGAAATAAATTGTTCCGCTAAGGCACAAATATCTGGTATGCAGGCTCATGGTGTTCCGACGTCTAAGATTTTGGGGTATATGGCTGGACAGTCTGGTGGCTATTCTCTAATGGGCTTCACTAAGAAGGATGCTTACAATTATATTAACAAGGCTAAGCGTGCAAAGATTATTGATGGGGACGCTAACGCCGCTGTTGTATACTTGGAGGGGAAAGCGGGGGCTGATCCGATGTCGATGGCTAGGTATAATCTTACTAAGGATAATATGCTAGCCAATATGTTTTGGGCGGATGGTGGCAGTAGAGTTGATTACCAATACTTTGGGGATGTTCTAGCCTTTGATTCGACCTACAAGAAAAATAAATATCAGAGGCCGCTGGTGATATTTTCTGGTGTGAATAACCATAAGCAGACGACAATATTTGGGTTTGGCTTGGTGTTAGATGAAAGCGTTGGGTCTTATAAGTGGTTGCTGGAAAATTTGTTGGAAGTCATGTGTAACAAGAAGCCGTCGGTTGTCGTCACGGATGGCTGTGATTCAATGAAAGCTGCAATCAAGTCTGTTTTTCCGGAGGCAACGCATCGATTGTGTGCTTGGCATATGGAGAAGAATGTAACCGCTAATGTGAAGGAAGAGGGACTGCGGCAATGTTTCACCCGGTGGCTGTATTCAGAAATGGAAATAGATGAATTTGAGGCTGAGTGGGATGATGCCATTGAAGAGTATGGGTTGCAAAACAGTTTTTGGGCCAAAGAAACTTTTCAGAAGAGGATGATGTGGGCTAATGCGTATTTACAGGACAAGTTCTGTGCAGGGTTTCGGACAACATCCCGGTGCGAAGGCATTAACGCATACGTGAAGAATTTTCTTAAGTCTAGGCACAGTCTCCTTGATATGGTTAAAAATTTGGAGTTGGTCGTGCGAGAGTACCGAAATAACGAATTAGTTGCACAATTTAGATCACTCCATGGGATGCCAGTTATGACAACTTGTTTGGATCCTCTTGAAAGGTATGCTGCAGATGCATACACACGGGAGATATTCGTTGATGCGAAGAAGGAAATAGTGGGTGTCGGTGCAGTTAATTTTGTAGCCAAGATAAGACGTTCAACTACAATGGTGTACACGTTGGAGGAATACGGTGACCCAGGTAGAGAGGTGATTGTGTTGTACGATAGGGTTTCAAGGAAAATGGAGTGCGCATGCAATTTTTGGAAGCAAAAGGGAATACCTTGTAGGCATATGTTTTTTGTAATGAAGCATGAGCACTTGACTCGAATTCCTGATAGCCTGGTTCTGAAGAGGTGGCGAAAGGATGCAAAGTCGTTGGATAAGTATGCTGAGATCACGGAAGTTGGTAGTGAAATTGGTTTCTTGTTGCGCCATGGTGCACTTCATGCAGCCGCACAGTGGATGCTTTATGTTGGAGCCAGGAGCCCTTTGTCTTTCACACAGGCGCTTAAAGGTCTCCATGCGCTGTGTCAAGAACTGGATAGAGGCCCTGAAAATGGGGGTCAGAAGAAAGCTCTTGATATGGTTGACTTACACGACCCTGTTGTTGCGAAGACTAAGGGTGCCCCTCGTGTGAGGAGGCAGGGCGGACGGAAGAGGCGCTGCACCCGTTGCCGCAAAACGGGTCACACAAAACGACACTGCAACGCCGACCGGTCCTTTGTTTCCAAATCTGAAGAGAGCAAAGATTTTCAGGCTACAACTTTAGGGTCGGAGGAGTCTTCACCGACGGAATGGCTGTTTGGCGTGCAGATCCGATTCGAACAAGGGAAGAAAGGTGTTACCGGTCCCAATAATTTGTGTGCACCGATTTGGCTGGAGGCATCAGGTTCGAAGATTACCTCACAACATGAAATTTCTGCTGCAGCTGGACATAAGGAGACTATGGAATGGGAGCCGAACACGATAAGTAACACCGACGAAGTAATAGCACAGCTGATGACTGAAATAACTTATCTCAGTTCAAGATTGGGTTCGAGCTCCGCAGCATAA 2430 0.4502 MAESGYELSDEEADEYRDVLQLSKEDIMNKAFRSDEAAYEFYRRLGKCFGFGIRKGDSGKDDSGRVIRRRFFCNRAGLRERRHYDRLDRQRSHKPETRTNCEAKLSVYLDVVSGIWRVRKIVLDHNHDLTPTYMVHMMTNFREINCSAKAQISGMQAHGVPTSKILGYMAGQSGGYSLMGFTKKDAYNYINKAKRAKIIDGDANAAVVYLEGKAGADPMSMARYNLTKDNMLANMFWADGGSRVDYQYFGDVLAFDSTYKKNKYQRPLVIFSGVNNHKQTTIFGFGLVLDESVGSYKWLLENLLEVMCNKKPSVVVTDGCDSMKAAIKSVFPEATHRLCAWHMEKNVTANVKEEGLRQCFTRWLYSEMEIDEFEAEWDDAIEEYGLQNSFWAKETFQKRMMWANAYLQDKFCAGFRTTSRCEGINAYVKNFLKSRHSLLDMVKNLELVVREYRNNELVAQFRSLHGMPVMTTCLDPLERYAADAYTREIFVDAKKEIVGVGAVNFVAKIRRSTTMVYTLEEYGDPGREVIVLYDRVSRKMECACNFWKQKGIPCRHMFFVMKHEHLTRIPDSLVLKRWRKDAKSLDKYAEITEVGSEIGFLLRHGALHAAAQWMLYVGARSPLSFTQALKGLHALCQELDRGPENGGQKKALDMVDLHDPVVAKTKGAPRVRRQGGRKRRCTRCRKTGHTKRHCNADRSFVSKSEESKDFQATTLGSEESSPTEWLFGVQIRFEQGKKGVTGPNNLCAPIWLEASGSKITSQHEISAAAGHKETMEWEPNTISNTDEVIAQLMTEITYLSSRLGSSSAA* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0037 809 SMART 26again6 540 567 IPR006564 GO:0008270
Amo20g0037 809 Pfam FAR1 DNA-binding domain 40 130 IPR004330 -
Amo20g0037 809 ProSiteProfiles Zinc finger SWIM-type profile. 527 565 IPR007527 GO:0008270
Amo20g0037 809 Pfam MULE transposase domain 252 346 IPR018289 -
Amo20g0037 809 ProSiteProfiles Zinc finger CCHC-type profile. 679 694 IPR001878 GO:0003676|GO:0008270
Amo20g0037 809 PANTHER OS03G0181600 PROTEIN 29 588 - -
Amo20g0037 809 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 588 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0037 Amo-Chr20 345554 349299 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g0037 MULE 1.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0037 - - aip:110265238 1219.53