Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0032 GATTTTCAAACAAACCTTAGAGAAACTTTTGCATCACAAACAATGCAATATTCACTAACAATGAAGGAAATTGATCTTCCATTTGGAGTCCCTAATTCATCCCATGGATTCTACCATGATCTCCATCACCATGTTGATCAATTTCATCAAGTGAATGTGAATGGCAATTCCTCATCATCAAATCATCAAGTTTCTCTAACAAATCTTGATTCCTTTGATGTCTATGAGTGCAAGCCTTTTGTGGAGAATAATAATGTTCATGTTATGGAGGATTTCCAATATAATGGAGGAGGTTTTGGTAATTTGAACCTCACTAATAACAATAATCAAAGTACTCCATTGGATATCATAGTTGGAAACCAAGGTTATTTACCATTTTATCCTCTTCAAGAGACCAAGCCTACAAATCTCGTTGTGCCGGATGAAGTCTCATCCATATCAACAATGGGTTATTACAAAAGGGTCAATGGTGTCAACAAAAACAATAAGTTATACCCAACATCCAAGAAGACCTACAAACTTCAAAAGAAGTCTAACATACTGGTAGAACAATATGGATTAAGGAAATGGTCTCATATTGCTCAAATGCTGCCTGGGAGAATTGGAAAACAATGTAGAGAGCGTTGGCATAATCATCTAAGACCTGACATTAAGAAAGATATATGGACGGAAGATGAGGATAAGATCCTAATTGAAGCTCATGTGGAGATAGGAAACAAGTGGGCAGAAATTGCGAAAAGATTGCCCGGACGAACTGAAAACTCGATCAAGAACCATTGGAATGCTACCAAGAGAAGGCAATATTCAAAAAGGAAGTGTAGATCCAAGTACCCTAAAACATCTCTCCTTCAAGAATACATCAAGAGTTTAAATTTGGACAAAAATCCTCTAATGGACTATAGGAGAAAATCTGTTAACCCTAGAGGCAATGCTAACAAAACTAGCTCGGCCGCCTCAAGCAAAGCACCACCACCACTTTCGGCGGCGCAACCTCAGCCGGTAGGTAATAATAGTCAATTCTCTATGTCGGATCGGTTGGTGCCAAGTTATGATTTCAATGAGGTAATGCCGGATTTTTGTTTTGATGAGAATTTGTTTGAAGGAGGGTGTAGCATTGATTCATTGCTTGATGACATTCCTTGTGCTCCTATTATGGATACTAGTACTATTAATGTTGTGGATGTTGATTACAAGTGTGATGATATGCAACAAGAGATTGTGGAATCCATGATGGAGGGTGATGGAATAATCAAGAAGGAGATGGATTTGGTGGAGATGGTGACAAAGGTCAATAAAAATTGA 1302 0.3802 DFQTNLRETFASQTMQYSLTMKEIDLPFGVPNSSHGFYHDLHHHVDQFHQVNVNGNSSSSNHQVSLTNLDSFDVYECKPFVENNNVHVMEDFQYNGGGFGNLNLTNNNNQSTPLDIIVGNQGYLPFYPLQETKPTNLVVPDEVSSISTMGYYKRVNGVNKNNKLYPTSKKTYKLQKKSNILVEQYGLRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWTEDEDKILIEAHVEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPKTSLLQEYIKSLNLDKNPLMDYRRKSVNPRGNANKTSSAASSKAPPPLSAAQPQPVGNNSQFSMSDRLVPSYDFNEVMPDFCFDENLFEGGCSIDSLLDDIPCAPIMDTSTINVVDVDYKCDDMQQEIVESMMEGDGIIKKEMDLVEMVTKVNKN* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0032 433 SMART sant 168 215 IPR001005 -
Amo20g0032 433 SMART sant 218 266 IPR001005 -
Amo20g0032 433 SUPERFAMILY Homeodomain-like 193 272 IPR009057 -
Amo20g0032 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 268 IPR017930 -
Amo20g0032 433 Pfam Myb-like DNA-binding domain 222 261 IPR001005 -
Amo20g0032 433 Pfam Myb-like DNA-binding domain 181 213 IPR001005 -
Amo20g0032 433 CDD SANT 181 213 IPR001005 -
Amo20g0032 433 MobiDBLite consensus disorder prediction 255 276 - -
Amo20g0032 433 PANTHER MYB PROTEIN-RELATED 171 376 - -
Amo20g0032 433 MobiDBLite consensus disorder prediction 307 340 - -
Amo20g0032 433 Gene3D - 171 218 - -
Amo20g0032 433 Gene3D - 221 286 - -
Amo20g0032 433 ProSiteProfiles Myb-like domain profile. 214 264 IPR001005 -
Amo20g0032 433 CDD SANT 222 264 IPR001005 -
Amo20g0032 433 ProSiteProfiles Myb-like domain profile. 181 213 IPR001005 -
Amo20g0032 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 213 IPR017930 -
Amo20g0032 433 MobiDBLite consensus disorder prediction 298 340 - -
Amo20g0032 433 PANTHER BNAC03G62830D PROTEIN 171 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0032 Amo-Chr20 308044 309830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0032 73 380 MYB Transcription Factor Family AT4G18770 48.521 2.74e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo20g0032 Myb_DNA-binding 4.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0032 K09422 - gmx:102662267 425.631