Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0030 ATGAGTAGCTTACAATGGAAGAAACTGAAAGTCTTGGGAGTGGATTCTTATGGCACTGTTTATCTTGCAATTGTTGTTGATACACAAACACCATATCAGAGCTTCATTACTGAGAAGAGCTCCATTCTCAGCGGTGGTTGCGAAGAAATCATTCGATGCTTTGGCACCAAGATCACGGTAAAGCACGGATGTTATTTTTACAATCTTCTGTTGGAGTATGCTCCTCACGGTTCTTTGGATGACTTGATCCACAATAAACCTCTCCCGGAGACCGACGTGAGCGTCTATGCACTCATGATTGTTAAAGGGTTTTTGCATATTCATCGCAAAGGAATCGTCCACTGTAACCTCAATTCGGAGAACATTCTTCTGTTTCCTTCATTGGAGAAAGAGAGTGCATACTATCAATTGAAGATTGCGGATTTCAAATTATCTAAGACCAAAGAGGAGGAAGCAGAGTTTGAGGTTTGGAAGTCCAAGACTAGAGGGCCTGATGGCTATGCTGTAGGGTCTCTTGGGTCAGGCCGTCTTCTTCTCTTTGATGGCTTTGCCGAAAGAGAGTTGGAGTCAGGCGGTGTTAGGAAATAG 588 0.4354 MSSLQWKKLKVLGVDSYGTVYLAIVVDTQTPYQSFITEKSSILSGGCEEIIRCFGTKITVKHGCYFYNLLLEYAPHGSLDDLIHNKPLPETDVSVYALMIVKGFLHIHRKGIVHCNLNSENILLFPSLEKESAYYQLKIADFKLSKTKEEEAEFEVWKSKTRGPDGYAVGSLGSGRLLLFDGFAERELESGGVRK* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0030 195 SUPERFAMILY Protein kinase-like (PK-like) 6 155 IPR011009 -
Amo20g0030 195 ProSiteProfiles Protein kinase domain profile. 6 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0030 195 SMART serkin_6 6 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0030 195 Gene3D Transferase(Phosphotransferase) domain 1 1 171 - -
Amo20g0030 195 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 164 - -
Amo20g0030 195 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 164 - -
Amo20g0030 195 Pfam Protein kinase domain 33 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0030 Amo-Chr20 302809 303860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0030 4 156 MAP Kinase Kinase Kinase AT4G36950 35.673 3.95e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo20g0030 Pkinase 7.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0030 - - aip:107610915 236.884