Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0027 ATGATGAATCCAACAATGGAAGAAGAAGATTATAATCAAGGACAACACATCAACAAGAAGAACAAGCATGTGTGCAAGTTCTGCAGCAGGAGCTTCCCTTGTGGTAGATCCTTGGGTGGTCACATGAGGTCTCATGTCATCAATGGTGACATAGATCATCACCATGACAATAACAAGCTTCTTGCATCATCATCAACAGCAAAAATTAAGAAGATGCTTTCATCTTCTTCATCTACAGAAAACAACACAGGAATAGGTTCTGAAGGCTATGGTCTGAGAGAGAATCCCAAGAAGACATGGAGGCTAACCAATTCAACAAGTGAAGACAATTCTCTGTTGTTCTGCAAGGATTGTGGTAAAGGTTTTCAGTCTTGGAGAGCACTATTTGGCCACATGAAGTGCCATTCTTCTGAGAAAGTAGAGAGCATGGAGTGTGATCAAGATTCATCATGGACTAACAATAGTGCTAGCCATTCTGATAATGAAGAAGCCAATGCTCCAAGCAGAAGGAGAAGATCCAAGAGAACAAGAACAAGGTACATAGCACCATTATCAGCACCAGCAGCAACAACAACTGATTCTTCTGTTTCTGAGGCTGATGAGCATGAACAAGAAGAAGTTGCTATGAGCTTGATGATGTTAAGCAGGGATTTGAGTCCATGGTGTGGTGTCAATTCTGTTTCTGAGTTCTCTAAGAACAAGAACAAGAAGCTTGTCAACATTGGTTCTGAGTTTTCAAAATTAGGCAGCTATTTGAGTTCTCCAAATCTAAGCTCCAAAGGGAAGAAAAGTTCAGAATTTTTGGCTACTGAGAGTGCCAAAGGAGTTAAGGTGATGAACAACACCACAGTTTCAGTTAATGGTTTCAGCAAGATTATTGGGAAGGATAAGAAAAAGTATGAACTTGATTCTGAGTCTGCATTTGAAGAAGGTACTACTAACAATAAGTACAGTTCAATTAAGGCAAAGTTTTGGGATTCTGGATCAAACAAAAAGCCTAATTCATCAGAAGGTGAATTCAGCATCAAGAGCAGTTCTTCTCATAATCATAAGAGAGGAAAGTTTGAGTGTACAACCTGCAACAAGATCTTCCATTCATACCAAGCTCTTGGGGGTCACAGAGCAAGTCACAAGAAGATCAAAGGTTGCTCTTTTGCTTCAAGGAATAATAATGATCAGAGCAGTGAAAACAGCATTGAGTTTGAAGCTGAAGCTGAAGCAGAACATGAAGAAGCACCACCACCATCATCACCCACCCCCACTGATGCATCACAACAAGTACATGAATTTGGTAATAATAGTAATGGTTTTGACAGAGAATCCAAGAAGGGAAACAAGAACAAGGGGCATGAATGTCCAATTTGCTTTAAGGTATTTTCATCTGGTCAAGCCTTGGGTGGACACAAGAGGTCCCATATGGCTTCTGCTTCTGATACTGGGAACTTTCATCAAACAGTTGTACTTCAAGAATCTTCAGTGCCTGAGATTAGGGACTTGCTTGATCTCAATCTTCCTGTTGCTGAAGCTGCTGCTACTGAGGAAGATGATGAAGAAGAAATCAATCCTCATGCTTCTGATTCTTACACTACTTGGTGGGAAAATCACAAGCAGGAAGCATTGGTAGGTCTCATGTCTAACTAG 1641 0.4059 MMNPTMEEEDYNQGQHINKKNKHVCKFCSRSFPCGRSLGGHMRSHVINGDIDHHHDNNKLLASSSTAKIKKMLSSSSSTENNTGIGSEGYGLRENPKKTWRLTNSTSEDNSLLFCKDCGKGFQSWRALFGHMKCHSSEKVESMECDQDSSWTNNSASHSDNEEANAPSRRRRSKRTRTRYIAPLSAPAATTTDSSVSEADEHEQEEVAMSLMMLSRDLSPWCGVNSVSEFSKNKNKKLVNIGSEFSKLGSYLSSPNLSSKGKKSSEFLATESAKGVKVMNNTTVSVNGFSKIIGKDKKKYELDSESAFEEGTTNNKYSSIKAKFWDSGSNKKPNSSEGEFSIKSSSSHNHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCSFASRNNNDQSSENSIEFEAEAEAEHEEAPPPSSPTPTDASQQVHEFGNNSNGFDRESKKGNKNKGHECPICFKVFSSGQALGGHKRSHMASASDTGNFHQTVVLQESSVPEIRDLLDLNLPVAEAAATEEDDEEEINPHASDSYTTWWENHKQEALVGLMSN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0027 546 SUPERFAMILY beta-beta-alpha zinc fingers 355 472 IPR036236 -
Amo20g0027 546 SMART c2h2final6 23 45 IPR013087 -
Amo20g0027 546 SMART c2h2final6 355 377 IPR013087 -
Amo20g0027 546 SMART c2h2final6 450 472 IPR013087 -
Amo20g0027 546 SMART c2h2final6 113 135 IPR013087 -
Amo20g0027 546 ProSitePatterns Zinc finger C2H2 type domain signature. 357 377 IPR013087 -
Amo20g0027 546 ProSitePatterns Zinc finger C2H2 type domain signature. 452 472 IPR013087 -
Amo20g0027 546 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 20 546 - -
Amo20g0027 546 SUPERFAMILY beta-beta-alpha zinc fingers 20 46 IPR036236 -
Amo20g0027 546 MobiDBLite consensus disorder prediction 73 88 - -
Amo20g0027 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Amo20g0027 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 355 382 IPR013087 -
Amo20g0027 546 MobiDBLite consensus disorder prediction 73 95 - -
Amo20g0027 546 Gene3D Classic Zinc Finger 352 472 - -
Amo20g0027 546 MobiDBLite consensus disorder prediction 145 202 - -
Amo20g0027 546 MobiDBLite consensus disorder prediction 146 162 - -
Amo20g0027 546 MobiDBLite consensus disorder prediction 327 343 - -
Amo20g0027 546 Pfam C2H2-type zinc finger 450 474 - -
Amo20g0027 546 Pfam C2H2-type zinc finger 23 45 - -
Amo20g0027 546 Pfam C2H2-type zinc finger 355 379 - -
Amo20g0027 546 Pfam C2H2-type zinc finger 115 137 - -
Amo20g0027 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Amo20g0027 546 MobiDBLite consensus disorder prediction 327 352 - -
Amo20g0027 546 SUPERFAMILY beta-beta-alpha zinc fingers 112 140 IPR036236 -
Amo20g0027 546 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Amo20g0027 546 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Amo20g0027 546 MobiDBLite consensus disorder prediction 387 447 - -
Amo20g0027 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 450 477 IPR013087 -
Amo20g0027 546 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 20 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0027 Amo-Chr20 277746 279525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0027 352 516 C2H2 Transcription Factor Family AT2G45120 36.747 2.50e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo20g0027 zf-C2H2_6 4.9e-11 CL0361