Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0018 ATGGGTCTAACAGAAGAACAGAGACAACAAATCGAAGCAAATCGCCAAGCCGCTCTCGCCAAACGCAAAGCATTTCTTGAATCCCAACAACAACAACAACAACAACTACTTTTCAAATGCCAGAAGCTCTCTCATTCTCGCTACTCTTCTTCAACATCCAAACCCGCCCTTATTCCAAAGTTCGTTGCCAGGCTCGAAATATGCTCTCCAGATTCCTTCTCCGTTGTGCCTATCCCCTCCGACGACGACACCTTCTCCGCCCTCAACGGCCTCCTCTCCGACCTCCTCCCCTCTCACTTCACTCAGATCTCCACCGCCGTTGCCGATGCCTCTGTCTACCACCTTTCCGACTACCTCCGCGTCCTCAACTGCCTCAAGGCAGCATCTCACCAGATTGCTGACGTGGAGGACATTCCCTGGAACACGCTCAAAGCCGTTGAGACCATGATGCTGGCGTCTGGTGGTGGCGGCACCTGGACCCCGACCAGGCCCGAGCATCTCACCGACGAGCAGGTCGAAGACCTCATCGCGAAGCTTCCGAGGAGTTTGGTGGATGCTCTGATGCCGTTTCAGTTGGATGGGATTAGGTTTGGACTCAGAAGGGGTGGAAGGTGCCTCATTGCCGATGATATGGGACTCGGAAAGACCCTCCAGGCGATTGCTATTGCGGGATGTTTCATGCATGAAGGTCCTATACTTGTGGTTTGCCCTGCTGTTTTGCGTTTTTCATGGGCAGAAGAATTGGAACGTTGGCTTCCTTGCTGTTTGCCTGCTGATATTCATGTTGTTTTTGGTCATCAAGATAACCCTGTTCATTTAACAAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTCAATCGTCTAAAGAAGAACATGATTGAACGTGAGTGGGCTCTCCTGATTGTTGATGAATCTCATCATGTGCGATGCACGAAGAAAGCCAAAGAGTCAGGAGAGACACAAGCTGTTCTTGATGTGGCAACGAAAGTCAAGCATATAGTTCTGCTATCAGGAACGCCCTCATTGTCAAGACCATTTGACATTTTTCATCAGATAAATATGTTATGGCCTGGTTTGTTGGGGACAAATAAACGTGAGTTTGCAAAAACCTATTGTGACATGAAATTTTTCATGGGCATCCAAGGAAAAGTGTTTGCGGATTATTCAAAGGGCATTCGGTTGGTGGAGTTGAACGTGTTACTTAAGCAAACTGTTATGATAAGGCGTTTGAAGGAACATGTGATGCTACAGTTACCTCCAAAGCGGCGGCAAATTATAAGACTGTTGTTGAAGAAATCAGATATTGTTGCTGCAAAAACTGCAGTTGGGGCATTGACAATTGATGACCCTGAACGTGCAAGTGAAGACATGCCTCTAGGAAACTCAGATGAAGTTGATGGGGACCTTTCTGTCCAAGAACTTGGGATTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCACTCATAGCAGGATCGGAGAATTCTAAAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGTGTAGGTTTTGTGCGAATTGATGGAAGTACTCTTCCAAGAGATAGGCAATCAGCAGTAGTAGCATTTCGATCATCATCAGAGGTTAAAATTGCGATAATAGGTATTTTGGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTGGTGTTCTTGGAGCTACCTCAGTGCCCAACTGTAATGCTTCAGGCCGAGGATAGAGCTCATCGACGGGGGCAAAAAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTCGGATGAGTTGCGTTGGAAAAACTTGAATAAAAGTTTGCACCGTGTTTCAAAAACAACAGACGGAAAATATGATGCAATGAAGGAGATAGTGGTTGATGATATTTCTTACTTAGAGACATATTTCAAAACTGATAGTTCTGAGGAGCAATCTGCACGTGAAAAGGCATTAGTTGAAACACTGTTGGATAAGAAACCTTCCCCAGTAAATTTAAGTGAATCTGAAGTAAAACAAGATGATAAATCTGATGAGCAGGCTTCTTTTGACAATAACTCAATTTCTACTGCTAATATCACGGTGCAGGACAAGAAATCAATTCCAACAGTAGAAGCAGATGACATGCAGCCTGACCATCAACTAGAAACAGATGGACATGGGTCTAGTCATGTTGGTTCTCTGCGTTTTGAGGTGAGCCCATACACTGGTAGGATCCACTTGTATTCTTGCGTTTTGGGTACAGATGCAAGACCGCAGCCACTTTATGAAAATTTCCGACCAGAGGAACTTGAGTTGCTATGTCCTGTTTCTGATGATGAGAAAAAGAAGATAGAAGTTAAATCTGTCAAGGAGAATCCTGTTTATAGGCATTCTCTCATGGAGTTTGCACATGAGTGGAGGAGTTTGAGGCCAATTGAACGCAAGAAGTTACTTGGGAAACCATTACAGCTTCCTTTGGCAGTTGAATTATGCTATTTGAGTGAAAGCAATAACCACAATAACAAGGGGTTATTAAATGGTGGAAGCAAACGACGTATGACACCTTTGGTGGAGGTCTGCCATCCTTTACCCGAAGACGCTGTGTGGAAGAAGGTTTATCTACGAAGTGGCCTTGGTAAGAAGGAAAAAGAATATACTCAAGGCTGGAGTGTGACTGATGAACCACTCTGTAAGCTTTGTCAAAAGCAGTGCATGGGTAAGAATGCCAAGGCACCTGAATTTTTCGAAGACCTGTTTTGTAACCTTGCCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAGATTCTTACGTCAGGAACTTTTCCAAATTGAACATGGTGTGTGCACAAATTGCCTATTGGACTGCCATAAGCTTGTTGAGCACATAAAACCTTTATCATTGGAAAGGCGACGAGAGTACATTGAGAAAGTAGCACCAAAAGTCGCAAAGCGGAAGAAGATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCATGCTGATCATATAATTCCAGTGTATCAAGGCGGAGGTGAATGCAAACTAGAAAATATGAGGACTCTGTGTGTGGCCTGCCATTATGATGTTACCAAAGAACAGTGTGATGAGCGACGCAAAGCAAGAGCAAATGCCAGGAAACACCTAAAATTTGTAATGAATAACCTTAAAAATGGTCTGACGGGCACTACTGTCTCTAATGCTAAGGAGCATGAGGCACAGGAAGGAGATAAGCTCTTTATCAATGTCCCTGGAAGTGCATATTCTCTAGCTGATCCCTCAGAAAGTGGAAAACATTAA 3342 0.4411 MGLTEEQRQQIEANRQAALAKRKAFLESQQQQQQQLLFKCQKLSHSRYSSSTSKPALIPKFVARLEICSPDSFSVVPIPSDDDTFSALNGLLSDLLPSHFTQISTAVADASVYHLSDYLRVLNCLKAASHQIADVEDIPWNTLKAVETMMLASGGGGTWTPTRPEHLTDEQVEDLIAKLPRSLVDALMPFQLDGIRFGLRRGGRCLIADDMGLGKTLQAIAIAGCFMHEGPILVVCPAVLRFSWAEELERWLPCCLPADIHVVFGHQDNPVHLTRCPRVVVISYTMLNRLKKNMIEREWALLIVDESHHVRCTKKAKESGETQAVLDVATKVKHIVLLSGTPSLSRPFDIFHQINMLWPGLLGTNKREFAKTYCDMKFFMGIQGKVFADYSKGIRLVELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLLKKSDIVAAKTAVGALTIDDPERASEDMPLGNSDEVDGDLSVQELGIAKLSGFREWLSLHPLIAGSENSKKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGSTLPRDRQSAVVAFRSSSEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQKNAVNVYIFCAKDTSDELRWKNLNKSLHRVSKTTDGKYDAMKEIVVDDISYLETYFKTDSSEEQSAREKALVETLLDKKPSPVNLSESEVKQDDKSDEQASFDNNSISTANITVQDKKSIPTVEADDMQPDHQLETDGHGSSHVGSLRFEVSPYTGRIHLYSCVLGTDARPQPLYENFRPEELELLCPVSDDEKKKIEVKSVKENPVYRHSLMEFAHEWRSLRPIERKKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRMTPLVEVCHPLPEDAVWKKVYLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCMGKNAKAPEFFEDLFCNLACYEEYRMRTSNRFLRQELFQIEHGVCTNCLLDCHKLVEHIKPLSLERRREYIEKVAPKVAKRKKMLEKLVNDPTEGNAWHADHIIPVYQGGGECKLENMRTLCVACHYDVTKEQCDERRKARANARKHLKFVMNNLKNGLTGTTVSNAKEHEAQEGDKLFINVPGSAYSLADPSESGKH* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0018 1113 SMART helicmild6 514 597 IPR001650 -
Amo20g0018 1113 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1068 - -
Amo20g0018 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 650 IPR027417 -
Amo20g0018 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 411 IPR027417 -
Amo20g0018 1113 CDD HNHc 1005 1045 IPR003615 -
Amo20g0018 1113 Gene3D - 935 1069 - -
Amo20g0018 1113 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 489 643 IPR001650 -
Amo20g0018 1113 Gene3D - 162 378 IPR038718 -
Amo20g0018 1113 MobiDBLite consensus disorder prediction 679 706 - -
Amo20g0018 1113 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 360 IPR014001 -
Amo20g0018 1113 Pfam HNH endonuclease 1011 1045 IPR002711 GO:0003676|GO:0004519
Amo20g0018 1113 Gene3D - 473 700 IPR027417 -
Amo20g0018 1113 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1068 - -
Amo20g0018 1113 Coils Coil 3 23 - -
Amo20g0018 1113 Pfam Helicase conserved C-terminal domain 494 597 IPR001650 -
Amo20g0018 1113 Pfam SNF2-related domain 205 437 IPR000330 GO:0005524|GO:0140658
Amo20g0018 1113 CDD SF2_C_SNF 479 608 - -
Amo20g0018 1113 CDD DEXHc_HARP_SMARCAL1 187 411 - -
Amo20g0018 1113 SMART ultradead3 183 379 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0018 Amo-Chr20 192984 204464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0018 177 615 RAD5 or RAD16-like Gene Family AT1G02670 21.805 4.64e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo20g0018 SNF2_N 2.2e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0018 K25861 - gmx:100788690 1556.19