Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0016 ATGATGAGTATGAGTAGTAGTAGTCATCAGTATTTGATTCCAAACTGGAACATGAAACAACAACAACAACAAAAACAAGAACAAGAACAGGAAACACTCCAATTAGAAGAGGGTATTACTATTACCAAATCTTCTCAAGCTTCTCCCACCACTCATCTTGTTCCCATGGCCAATAATTATGATGAGATTGCAGAGCTGACATGGGAAAATGGGCAGATATCAATGCATGGGCTCAGTGGGCTTGATCCAACTTCACAAAAAAAGCCCACATGGGTTAATAGGGCCCATGATACATTAGAGTCCATTGTTCAACAAGCCACATGCAAGAATAAAAAGTCAAAGTTGACCATAAAAGACAACCATGCTTATGTTGATGTTCCTACCACAACAAGCTCCATTGTTGCATCTTCAGGGGAACATCATCAAATGGTGCCAACACTTTCAAGGAAAAGATCACATTCTTCTTATTCCGATCAACAACAACATCGGAGAGATGTTAATTATGTTAGCATCAATAATACTAAGAAGATGTTATTAGAAGATCATAATACTAATAATAGAAAATGTGGTGTTGCTACTGCTAGTGTCACATTTTGTAAGGACAACAATGACATCACAACCATGATGACGTGTCCTTCTCTTGACTCTGGTCCAAGAAGCTTCAAAAATGATAAGATTCTTGAGGAGGATTCTGCTTGTCAAAGTGGATCGGAGGTTCGGAATAATGAAAATGATAGAGATGGTGGGAAAGGTGAAACAGGGCAGAGCAAATCATCATCAGTTGTAAGGAGAAATAGAACTGCTGCCGTCCATAATCAATCAGAGCGGAGAAGAAGAGATAGAATTAATCAGAAGATGAAAGCATTGCAGCGGTTAGTGCCTAATGCAAATAAGACAGACAAAGCTTCAATGTTGGATGAGGTGATTAAGTACTTGAAACAACTTCAAGCACAAATAGAAATGATGATGAGTGTGAGCATGCCACAGATGATAATGCAACAACAACTTCAAATGTCTATGCTAGCAAGATCAATGGCAAACAATGCTCCAAATCCAATTAGGCCATTGTTTCCACAACTCATCCAACCAACAACAACAATTGGAGCTGCTAACACTGCCTCTGCTCCAATGTTTCTTGCACCTTCCTTGATGATGCCTTCAAGCACCAATGCTTCATTTCCTCTGCCTTCTGCTTCATATGGGACTCCTACTTTTGCACAACCACTTAATATGGATATGTTGAACAACATGGCAGCATTTTACAGCCAACAGATGAATCATCATCAGAACAATCAAATCAAACCATGA 1308 0.3922 MMSMSSSSHQYLIPNWNMKQQQQQKQEQEQETLQLEEGITITKSSQASPTTHLVPMANNYDEIAELTWENGQISMHGLSGLDPTSQKKPTWVNRAHDTLESIVQQATCKNKKSKLTIKDNHAYVDVPTTTSSIVASSGEHHQMVPTLSRKRSHSSYSDQQQHRRDVNYVSINNTKKMLLEDHNTNNRKCGVATASVTFCKDNNDITTMMTCPSLDSGPRSFKNDKILEEDSACQSGSEVRNNENDRDGGKGETGQSKSSSVVRRNRTAAVHNQSERRRRDRINQKMKALQRLVPNANKTDKASMLDEVIKYLKQLQAQIEMMMSVSMPQMIMQQQLQMSMLARSMANNAPNPIRPLFPQLIQPTTTIGAANTASAPMFLAPSLMMPSSTNASFPLPSASYGTPTFAQPLNMDMLNNMAAFYSQQMNHHQNNQIKP* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0016 435 MobiDBLite consensus disorder prediction 136 164 - -
Amo20g0016 435 CDD bHLH_AtPIF_like 266 323 - -
Amo20g0016 435 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 431 IPR031066 -
Amo20g0016 435 Pfam Helix-loop-helix DNA-binding domain 270 316 IPR011598 GO:0046983
Amo20g0016 435 Gene3D - 262 324 IPR036638 GO:0046983
Amo20g0016 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 328 IPR036638 GO:0046983
Amo20g0016 435 Coils Coil 272 292 - -
Amo20g0016 435 PANTHER TRANSCRIPTION FACTOR PIF7 17 431 - -
Amo20g0016 435 MobiDBLite consensus disorder prediction 253 268 - -
Amo20g0016 435 MobiDBLite consensus disorder prediction 230 282 - -
Amo20g0016 435 SMART finulus 272 321 IPR011598 GO:0046983
Amo20g0016 435 Coils Coil 18 38 - -
Amo20g0016 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Amo20g0016 435 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0016 Amo-Chr20 181419 185858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0016 62 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 34.722 1.96e-35 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo20g0016 HLH 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0016 - - aip:107624044 804.283