Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0011 ATGAGATTGACACAAGGAATTGGAAAAAGTTCATTTGAGATCATGGATGGTAGGTGCAGGAAAGAGGAGAATACAATGGCAGTGGAAATTGCAATCCAGAGAGAGCTGGCACATAGGAAGAAGGTGGCAGCACCACATTTGAGATCACCAAATTCTAATTCCACTAAGGAGGTTTTTCCTTTACAGGTTAAATCACCAAGTCAAGCATTACCAGGTTCAACTCCAAGGCTATCTTTGAGTCAACACCTTTCTGGAACCAAGAGAAAGAAAACATTAGTCAATGCAGAGGCAGATAATAGTGTGTACTGCAAAATCTGCCAAGTATCTTGCTCAAGTCCATTCAATCTCAAGCAGCATTTGATAGGCCACAAGCACAGGGAGAAGCTGCTAGAACTCGAATCCGGCGAGAAAGATGGAACAAGTGAGAGTAATAGATGCTATGAGAGGCAATGGTGTGATATATGCAAAGTTTCATGTATGAATGAAGAGTTGCTGAAGCTTCACTTTCAAGGTAAAAAGCACAAGGCTCAATTACAGAGGTTGGAATTTGATCAGCAAGGTGGTGTGCAGCTTCAAAATAAGCAACAAAAATGGTGTGAACTATGCAAATTATGGTGCATTGATGAGTTTTCATTCGAGCAACATCTTCGAGGTAGAAAGCACATCTTGCAGCTGCATGCTATGGAGAAAGAAAAAAAAAATTAA 705 0.4057 MRLTQGIGKSSFEIMDGRCRKEENTMAVEIAIQRELAHRKKVAAPHLRSPNSNSTKEVFPLQVKSPSQALPGSTPRLSLSQHLSGTKRKKTLVNAEADNSVYCKICQVSCSSPFNLKQHLIGHKHREKLLELESGEKDGTSESNRCYERQWCDICKVSCMNEELLKLHFQGKKHKAQLQRLEFDQQGGVQLQNKQQKWCELCKLWCIDEFSFEQHLRGRKHILQLHAMEKEKKN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0011 234 SUPERFAMILY beta-beta-alpha zinc fingers 141 182 IPR036236 -
Amo20g0011 234 MobiDBLite consensus disorder prediction 42 85 - -
Amo20g0011 234 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 45 229 - -
Amo20g0011 234 SMART ZnF_U1_5 147 181 IPR003604 GO:0003676|GO:0008270
Amo20g0011 234 SMART ZnF_U1_5 194 228 IPR003604 GO:0003676|GO:0008270
Amo20g0011 234 SMART ZnF_U1_5 98 132 IPR003604 GO:0003676|GO:0008270
Amo20g0011 234 SMART c2h2final6 197 221 IPR013087 -
Amo20g0011 234 SMART c2h2final6 150 174 IPR013087 -
Amo20g0011 234 SMART c2h2final6 101 123 IPR013087 -
Amo20g0011 234 Gene3D Classic Zinc Finger 140 190 - -
Amo20g0011 234 Gene3D Classic Zinc Finger 93 139 - -
Amo20g0011 234 Gene3D Classic Zinc Finger 191 233 - -
Amo20g0011 234 SUPERFAMILY beta-beta-alpha zinc fingers 98 130 IPR036236 -
Amo20g0011 234 Pfam Zinc-finger of C2H2 type 198 221 - -
Amo20g0011 234 Pfam Zinc-finger of C2H2 type 102 125 - -
Amo20g0011 234 Pfam Zinc-finger of C2H2 type 151 174 - -
Amo20g0011 234 SUPERFAMILY beta-beta-alpha zinc fingers 193 228 IPR036236 -
Amo20g0011 234 MobiDBLite consensus disorder prediction 47 85 - -
Amo20g0011 234 PANTHER ZINC FINGER RNA-BINDING PROTEIN 45 229 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0011 76 229 C2H2 Transcription Factor Family AT5G61190 24.590 3.96e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo20g0011 zf-met 2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0011 - - aip:107619886 471.47