Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0010 ATGTCACAGAAGGAAGCAGATTCATGGGGCTTCCTGTTAGTCTGTTTCTTGGTCCTTTTCTTCCCAGGTAAATTGGTTGCTGGGAGTTCAATGGATACAGACAAGCAAATTATGCTGAAGCTGAAATCTTACATAGAGAATCAAACTGTAGGTGAGACAGGAAGGTTTATGAACTGGAACAACTCAAATCATTGTGATTGGTCAGGAATCTCTTGCAGCCTCATCAATGGTTCAGATTCATGGAGGGTTGTGAGCATAGACCTCTCTTCAAGTTCCATATCTGGTGAGATGTTCAGCAACTTCTCTATGCTCACTGAGCTCACACACCTTGATCTCTCTGGAAATTCATTCATTGGTATGATTCCTGAGGACTTGAGGAAGTGCCAGAACCTTGTGTACCTCAACCTCTCCCACAATATTCTTGAGGGGGAGCTGAATTTGACAGGCTTGACGAGGTTGCAGATGCTGGACTTGTCTACAAACAGGATTCGTGGGGAAATTCGATCGAATTTCCCTGCCATTTGTGAGAGTTTGGTAACACTGAATGTCTCAGAGAATCACTTCACTGGTGGGATTGATGGATGCTTTGACCAATGCCTCAGGTTGCAGTACTTGGATTTGAGCACCAACAATCTTACTGGAAGCATATGGACTGGGTTCGCAAGGCTCAGACAGTTTTCGGTGTCAGAAAACTATCTCACTGGGATTGTTCCTTCTCATGCTTTTCCTGAAAATTGCAGCCTTGAAAAATTGGATCTTTCAGAGAATGGTTTTGTTGGTGAGGCCCCTAAGGAGATTGCTAACTGCAAAGAATTGGTGACTCTTGATCTTTCCAGCAACTATTTTAATGGGACGGTTCCTAAAGAATTCGGATCGATCTCAGGACTAGAATCATTGCTCTTGGGGAACAACACTTTTTCAAGAGATATTCCAGATTCCCTTTTGAACTTGTCCAAGTTGTTCATCTTGGATGTGAGCAACAACGGATTTGGTGGTGATGTACAAGTGATTTTTGGGGAACTCAGGCAAGTTAAGTTTCTTCTCCTTCAATCAAATTCCTACACTGGAGGACTGCTCACATCAGGAATTTTCTCATTGACAAATCTTTGCCGATTAGATCTAAGCTTCAACAACTTTTCAGGTCCATTACCTCCTGAAATCTCTCAATTGTCAGGTCTCACTTTCTTAACCTTAACCTACAACAAGTTCAGTGGACCAATTCCAGCTGAACTTGGAAATTTGACCAACCTTCAAGCACTTGATCTTGCCTTCAACAATTTCAATGGCTCAATCCCTCCAACCCTTGGAAAATTGAGTTCATTGCTATGGCTAATGCTTTCGGATAATTCGTTAACCGGTGAAATCCCACCAGAGTTGGGAAATTGCTCTAGCTTGTTATGGTTGAATCTTGCAAACAACAAGCTCTCTGGAAGCTTGCCCTCAGAATTGGCCAGAATCGGAAGAAATGCAATGGCCACATTTGAATTCAACAGAAGAAATACTATTGGCAAAATCATTTCTGGAAATAGTGGATGCTCAGCAATGAGGAGATGGTTACCTGCTGATTACCCTCCATACACGTTTGTGTATACTGTTCTCACAAGGAAGAATTGTAGAAGCCTTTGGTACAAACTTCTCAAAGGCTATGGTGTTTTCTCCACATGGACATATGATTCTTCCTCTAAATCATCACAGATAGGTGGTTATATTCAATTAAGTGGGAACCAGCTCAGGGGTGAAGTACCTGCAGAAATTGGTAACATGGTGAACTTCAGCATGCTGCAATTGGGGGATAACAAATTCTCTGGGAAGTTCCCATCAGTCATTTCAAACATGGCACTTATAGTCTTGAACATCTCCAGAAACAATTTCTCAGGCGAAATTCCAGGCGAAATCAGCAACATGAAGTCTCTTCAGGATCTTGATTTGTCTTGGAACAATTTCTCAGGGCCAATTCCTTCAAGTTTGTTCAACTTGGTTGAGCTTAGCACATTCAACATCTCATACAACCCCTTCATATCTGGTCAAGTGCCACAGAATGGATTTGTGATTTTTGACAAAAGTTCATATTTGGGTGACCCCCTCTTGAGCCTCCCTAGTTACATTAACAACACCAATTCTTCACACAAACATAAAAACTTGACCAAGTCCACAAAATTTTCTCCATTTTTCATGTGTCTTTCTCTATCACTGGCCACGTTGGTCTTTGGACTCATCTGCCTAATAGTTTATTTCTTGCTGAAAACTCCGAAGGTGGAACAAGGATACCTTAAAAAGGTGGATAATGATTCCACAAGTTCAGGTTCATCACCATGGAATTCGGATACTGTCAAGATATTCCACTTGAACAAGACAGTTTTCACACATGCTGATATCTTGTTGGCAACAGGGAACTTCAAAGAGGATAGAGTCATAGGAAAAGGTGGATTTGGGACAGTGTACAAAGGAGTGTTTCCAGATGGTAGAGTAGTGGCAGTGAAGAAGCTTCAAAGGGAAGGTATTGAGGGCGAGAAAGAGTTCAGAGCCGAAATGGAGGTTCTGAGTGGCCATGGTTTTGGTTGGCCTCATCCAAACCTTGTTACACTCTATGGCTGGTGCCTATATGGTTCCCAGAAGATCCTTGTTTATGAGTACATAGGAGGAGGAAGCTTGGAGGATCTAGTCACTGACAAAGTGAGATTAACATCAAAGCGGCGCTTAGAAGTGGCAATTGATGTGGCAAGAGCATTGGTCTACTTGCACCATGAATGCTACCCTTCAATTGTTCATAGAGATGTTAAGGCTAGCAATGTGTTACTAGACAATGATGGTAATGCCAAAGTCACAGACTTTGGACTTGCAAGATTTGTTGATGCTGAGGATTCTCATGTTAGCACAATGGTTGCTGGAACAGTAGGGTACGTTGCACCGGAATATGGACAAACAATGCAAGCAACAACAAAGGGTGATGTGTATAGTTATGGGGTTTTGACTATGGAGCTTGCAACTGGGAGAAGAGCAGTGGATGGTGGTGAAGAGTGCTTGGTTGAATGGGCTAGGAGAGTTCTGGGGTTGAGCCATTCCGAGCCAGTTTCGGTCATGGAGGGTGAAGAGGAGATGCTTGAGCTGTTACAAGTTGGGGTTAAGTGCACAAATGAGTCACCACAAGCTAGGCCTAACATGAAGGAGGTCCTAGCCATGTTGGTCAAGATATACAACAATAACCCTAGTGGAGAATCAGGTTATGGCCACCTTGTTTAG 3240 0.4275 MSQKEADSWGFLLVCFLVLFFPGKLVAGSSMDTDKQIMLKLKSYIENQTVGETGRFMNWNNSNHCDWSGISCSLINGSDSWRVVSIDLSSSSISGEMFSNFSMLTELTHLDLSGNSFIGMIPEDLRKCQNLVYLNLSHNILEGELNLTGLTRLQMLDLSTNRIRGEIRSNFPAICESLVTLNVSENHFTGGIDGCFDQCLRLQYLDLSTNNLTGSIWTGFARLRQFSVSENYLTGIVPSHAFPENCSLEKLDLSENGFVGEAPKEIANCKELVTLDLSSNYFNGTVPKEFGSISGLESLLLGNNTFSRDIPDSLLNLSKLFILDVSNNGFGGDVQVIFGELRQVKFLLLQSNSYTGGLLTSGIFSLTNLCRLDLSFNNFSGPLPPEISQLSGLTFLTLTYNKFSGPIPAELGNLTNLQALDLAFNNFNGSIPPTLGKLSSLLWLMLSDNSLTGEIPPELGNCSSLLWLNLANNKLSGSLPSELARIGRNAMATFEFNRRNTIGKIISGNSGCSAMRRWLPADYPPYTFVYTVLTRKNCRSLWYKLLKGYGVFSTWTYDSSSKSSQIGGYIQLSGNQLRGEVPAEIGNMVNFSMLQLGDNKFSGKFPSVISNMALIVLNISRNNFSGEIPGEISNMKSLQDLDLSWNNFSGPIPSSLFNLVELSTFNISYNPFISGQVPQNGFVIFDKSSYLGDPLLSLPSYINNTNSSHKHKNLTKSTKFSPFFMCLSLSLATLVFGLICLIVYFLLKTPKVEQGYLKKVDNDSTSSGSSPWNSDTVKIFHLNKTVFTHADILLATGNFKEDRVIGKGGFGTVYKGVFPDGRVVAVKKLQREGIEGEKEFRAEMEVLSGHGFGWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEDLVTDKVRLTSKRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDNDGNAKVTDFGLARFVDAEDSHVSTMVAGTVGYVAPEYGQTMQATTKGDVYSYGVLTMELATGRRAVDGGEECLVEWARRVLGLSHSEPVSVMEGEEEMLELLQVGVKCTNESPQARPNMKEVLAMLVKIYNNNPSGESGYGHLV* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0010 1079 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Amo20g0010 1079 SMART LRR_typ_2 414 437 IPR003591 -
Amo20g0010 1079 SMART LRR_typ_2 104 128 IPR003591 -
Amo20g0010 1079 SMART LRR_typ_2 150 173 IPR003591 -
Amo20g0010 1079 SMART LRR_typ_2 293 317 IPR003591 -
Amo20g0010 1079 SMART LRR_typ_2 635 659 IPR003591 -
Amo20g0010 1079 SMART LRR_typ_2 366 390 IPR003591 -
Amo20g0010 1079 SMART LRR_typ_2 438 462 IPR003591 -
Amo20g0010 1079 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 1068 - -
Amo20g0010 1079 SMART serkin_6 799 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0010 1079 Gene3D Ribonuclease Inhibitor 567 714 IPR032675 -
Amo20g0010 1079 SUPERFAMILY Protein kinase-like (PK-like) 772 1062 IPR011009 -
Amo20g0010 1079 ProSitePatterns Protein kinases ATP-binding region signature. 805 828 IPR017441 GO:0005524
Amo20g0010 1079 Gene3D Ribonuclease Inhibitor 338 516 IPR032675 -
Amo20g0010 1079 Pfam Leucine rich repeat 106 163 IPR001611 GO:0005515
Amo20g0010 1079 ProSitePatterns Serine/Threonine protein kinases active-site signature. 921 933 IPR008271 GO:0004672|GO:0006468
Amo20g0010 1079 Gene3D Ribonuclease Inhibitor 32 146 IPR032675 -
Amo20g0010 1079 ProSiteProfiles Leucine-rich repeat profile. 130 151 IPR001611 GO:0005515
Amo20g0010 1079 CDD STKc_IRAK 805 1064 - -
Amo20g0010 1079 Gene3D Phosphorylase Kinase; domain 1 762 878 - -
Amo20g0010 1079 Pfam Protein kinase domain 799 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0010 1079 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1068 - -
Amo20g0010 1079 ProSiteProfiles Protein kinase domain profile. 799 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0010 1079 Gene3D Transferase(Phosphotransferase) domain 1 880 1073 - -
Amo20g0010 1079 SUPERFAMILY L domain-like 222 482 - -
Amo20g0010 1079 SUPERFAMILY RNI-like 59 311 - -
Amo20g0010 1079 SUPERFAMILY L domain-like 569 675 - -
Amo20g0010 1079 Pfam Leucine Rich Repeat 637 659 IPR001611 GO:0005515
Amo20g0010 1079 Gene3D Ribonuclease Inhibitor 147 243 IPR032675 -
Amo20g0010 1079 Gene3D Ribonuclease Inhibitor 244 337 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0010 Amo-Chr20 134316 138410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0010 12 1073 Receptor kinase-like Gene Family AT1G55610 32.245 7.26e-155 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Amo20g0010 Pkinase 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0010 - - gmx:100813425 1479.92