LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo20g0008	ATGGGATGCGTCAGCTCCAAGCAGGCGGTCTCCGTCACGCCTGCCATCGACCACTCCGGGGCCTTCCGCCCCAATGCCGCCGACTTTTCCGACACCAACAACAAGAACAACGAGAGGACTGACTCGTCTGTTCTGACTCGGAGTGAGTTGGGCGAGTCAGGTAGGACCAGTTCTACTGCCTGCGAATCCCTCAGCTTCAGGCTCGGAAACCTCCACAAGTACGTCGAGGGAGAGCACGTCGCCGCCGGTTGGCCTGCCTGGCTAAGCGCCGTCGCCGGAGAAGCCATCCACGGCTGGATTCCCCTCCGCGCCGACGCATTCGAGAAACTCGAGAAGATTGGTCAGGGTACTTATAGCAGCGTGTTCAGGGCGAGGGAGCTTGAGACGGGGAAGATAGTGGCGTTAAAGAAGGTCCGGTTCGACAATTTCGAGCCGGAGAGTGTTCGGTTTATGGCGCGGGAGATAACCATTCTGAGGAGGCTTCATCATCCCAACATCATAAAGCTGCAGGGCTTGATCACTTCCAGGTTATCATGCAGCATATACCTTGTTTTTGAGTACATGGAGCATGACATCACGGGCCTCTTGTCAAGTCCTCAGGTCAAATTTACCGAACCTCAGATTAAGTGCTATATGAAGCAGTTGTTGTCTGGTCTCCAGCATTGCCATTCCAGGGGTGTCATGCACCGGGATATCAAGGGATCCAATCTTCTGGTGAATAATGAAGGGATACTCAAGGTGGCTGATTTTGGATTGGCCAACTTCTCCAGTTCTGCCTACAGGCATCCCCTCACCAGTCGAGTTGTCACTTTGTGGTATCGGCCGCCGGAGCTTTTGCTGGGTTCAACGGATTATGGCCCTTCTGTTGATCTCTGGAGTGTTGGCTGCGTTTTCGCTGAGCTACTTGTTGGGAAACCTATACTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCCCCGCCTGATGAATACTGGAAAAAGACCAGACTTCCTCATGCGACTTTGTTTAAGCCACAACAAGCATATGATAGTTGCCTCCGACAGTCCTTTAAAGATTTGCCTTCTTCCAGTGTAAATCTGCTGCAAACTCTTCTTTCCGTTGAACCATACAAGCGTGGGACTGCCGCATCTGCTCTCTCATCAGAGTATTTCAAAACAAAACCTCATGCATGTGAGCCATCAAGCTTGCCGACGTACCCGCCTAGCAAGGAAATTGATGCAAAACACAGAGAGGAGTCAAGGAAAAAGGTCACTGGACGAGCTCGTGGAACTGAAAAAAGAAAGCCATCAAGAAAGGCCCTTGGATTCAATAAACTAACTCCAGCAGAGGATTTGGCAAGTCAAACTCAAGCTTCCCATAAGGTCAATGGTAGATCTGTTTCCATCCTTCAAGAACAAAAGGCTAACACAGGTGAGGAGGAACAAAAGCCAGCTAGTGGTAAACTTGAAGATGCTTCCCATATGAAGAATTCATCTCAAGAAGATATTCCCTTTTCTGGGCCATTACAAGTTTCATCATCAAGTGGCTTTGCATGGGCAAAAAGTCGTAAAGATGACACTTCAATTCGATCCCACTGTCGAACTATTTCGAGAGGACATATTTTCAACCTGTCAGAAACTTCTACACTAAAATCAAGGAATAATTTGGATAACAGAAACCAGGAAAGTAAGGAGTCTTCTGGGAGGCGCACCAACTCTAGGGGCAGCGACCTACTTGACTTATCTAAGATTTCAATGCAGAATCCGTGGAATAGGTTTGATCGCCCAGATTCATTTGATGCTTCCGATGAGTACCATTCGCAAGAACTATCTATGGCACTTTATCATAGAGAAGATTCAGCATCGAAGAGAAGTAATCTGAGTTTTCAGGATCAAGGAGAGAAGGTTGAATATTCCGGACCCCTTCTATCTCAGATGCACACAGTTGATGAGCTCTTAGAAAAACATGAGCGTCATATCCGACGCACAGTTCGAAGATCATGGTTTCAAAGAGCTAAGAAGCATGGGAAGTAA	2034	0.4803	MGCVSSKQAVSVTPAIDHSGAFRPNAADFSDTNNKNNERTDSSVLTRSELGESGRTSSTACESLSFRLGNLHKYVEGEHVAAGWPAWLSAVAGEAIHGWIPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREITILRRLHHPNIIKLQGLITSRLSCSIYLVFEYMEHDITGLLSSPQVKFTEPQIKCYMKQLLSGLQHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSSSAYRHPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQAYDSCLRQSFKDLPSSSVNLLQTLLSVEPYKRGTAASALSSEYFKTKPHACEPSSLPTYPPSKEIDAKHREESRKKVTGRARGTEKRKPSRKALGFNKLTPAEDLASQTQASHKVNGRSVSILQEQKANTGEEEQKPASGKLEDASHMKNSSQEDIPFSGPLQVSSSSGFAWAKSRKDDTSIRSHCRTISRGHIFNLSETSTLKSRNNLDNRNQESKESSGRRTNSRGSDLLDLSKISMQNPWNRFDRPDSFDASDEYHSQELSMALYHREDSASKRSNLSFQDQGEKVEYSGPLLSQMHTVDELLEKHERHIRRTVRRSWFQRAKKHGK*	678

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo20g0008	677	Pfam	Protein kinase domain	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo20g0008	677	MobiDBLite	consensus disorder prediction	449	475	-	-
	Amo20g0008	677	SMART	serkin_6	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo20g0008	677	CDD	STKc_CDK9_like	107	391	-	-
	Amo20g0008	677	SUPERFAMILY	Protein kinase-like (PK-like)	101	396	IPR011009	-
	Amo20g0008	677	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	2	670	-	-
	Amo20g0008	677	MobiDBLite	consensus disorder prediction	557	571	-	-
	Amo20g0008	677	Gene3D	Phosphorylase Kinase; domain 1	95	189	-	-
	Amo20g0008	677	PANTHER	CELL DIVISION PROTEIN KINASE	2	670	-	-
	Amo20g0008	677	MobiDBLite	consensus disorder prediction	395	510	-	-
	Amo20g0008	677	MobiDBLite	consensus disorder prediction	26	56	-	-
	Amo20g0008	677	MobiDBLite	consensus disorder prediction	476	497	-	-
	Amo20g0008	677	MobiDBLite	consensus disorder prediction	410	426	-	-
	Amo20g0008	677	MobiDBLite	consensus disorder prediction	552	581	-	-
	Amo20g0008	677	ProSitePatterns	Protein kinases ATP-binding region signature.	113	136	IPR017441	GO:0005524
	Amo20g0008	677	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
	Amo20g0008	677	MobiDBLite	consensus disorder prediction	23	56	-	-
	Amo20g0008	677	Gene3D	Transferase(Phosphotransferase) domain 1	190	429	-	-
	Amo20g0008	677	ProSiteProfiles	Protein kinase domain profile.	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo20g0008	Amo-Chr20	77722	82253	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo20g0008	99	460	Core Cell Cycle Gene Families	AT5G10270	47.354	1.95e-114	351

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Amo20g0008		Pkinase	7.6e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo20g0008	-		-	gmx:100803328	1171.76