Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0007 ATGTTACTTATATTTGTTATGTATTTTTTTTCAGTATTTGACTGTTGCTTCTCGGCGAATGTGTTGGAAGAAGAAGCATACAGAGATTATATAGGGAATATAGTAGCACAGCTAAAAAATCAATATTTTACAGATGCTTCAATCATGGTATTCAATTTCAGAGAACGGGAAACGCGGAGCCAGATGTCAGATGTGTTGGCACAATTTGACATGTTGACGGTTATGGAGTACCCTCGGCAATATGCGGGTTGTCCGTTACTCCCTCTGGAGCTTGTGCACCATTTCTTCCGATCAAGTGAAAGCTGGTTGTCTGTGGAGGGGCAGCATAACGTGGTGTTATTGCATTGCGAAAGGGGGGGTTGGCTTGTCTTGGCGTTCATGCTAGCAGGCTTTCTTTTGTACAGGGGGCAGTATACAGGGGAGTTGAAGACTCTTGAAATGATGTACAAGCAAGCATCTAGAGAAGTCTTACGACTCTTTTCTCCTTTGAATCCCCAACCTTCTCAGTTGAGATATCTCCAGTATGTTTCCAGAAGACAATTGGGTTCTGAGTGGCCTCCACAAGAAACGCCCTTGCTTTTGGACTATTTGATCCTCAGAAACCTTCCATTGTTTGATGGTGGAGAAGGTTGCAGGCCTATTGTTCGTGTCTATGGTCCAGACCCTACAAGACCTGCCAATAGTAGCTCTAACATTCTTTTCGAAACTCCAGGTTCCCTCATTCAACACTACCCGCAGGCAGAATGTACGCTCGTGAAAATTGATATCCATTGTCGTGTTCAAGGGGATGTTGTTCTTGAATGCATACATTTGAGTGAAGATTTAGTTGGCGAGGAAATGATTTTTAGAATAATGTTTCATACTGCATTTGTTCGCTCAAACACATTGATCTTGAGTCGTGACGATATTGATATTGTGTGGGATTCAAAGGAGCAGTTCCCCAAGGACTTTAAAGCAGAGGTGCTTTTCTTGGACGCTTATGCTCTTGTACATAATCTATCCCCAATCAACGTAAGTCGAGATGTAAATGACAGTGAAAGTGATTCACCTGATGAGTTTTATGAAGTGGAAGAGATCTTTACGAATGCAATTGATGCACTTGAAGGTAGAGGAGAGTTTGGTTCTCCTATGGTCCGTGATGATAGAAGTCATATAGACATTTGGAAAGATTCTTCAGATCCTCAAGCCTCTACTTCAGATGATGGGAGTCACCAACAGGAGGTTAGAAGGGTAGAATTCGATCCTCAAGCCTCTACTTCAGATGATGGAAATCACCAACAGGAAGTTGAAAGGATAGCCTCTATTTCAGATGATGGGAATCACCAACAGGAGGTTGGAAGGGTAGAATCCGATCCTCAAGCCTCTATTTCAGATGATGGAAATCACCAACAGGAGGTTGGAAGGGTAGAATCCGATCCTCAAGCCGATCCTCAAGCCTCTATTTCAGATGATGGGAATCACCAACAGGAGATTGGAAGGGTAGAATCTGATCCTCAAGCCTCTACTTCAGATGATGGGAGTCACCAACAGGAGGTTAGAAGGGTAGAATTCGATCCTCAAGCCTCTACTTCAGATGATGGGAATCACCAACAGGAGGTTGGAAGGGTAGAATCTGATGTTAACATAGTTAAAGACATTGTTATTGATGATGTCAAATACAAGTTTCAAGAGATGACAGATTCGGATCCTCATGAGGTTAAAGACATTGTTGTCGATGAAGTGGAGATTAAGTCGAATTCAATTGCAGATAAAATGAATTTGCAAGATGAGGTGACAATTATGCACAAAAATTTTGATGAAAAGGAGGAAAAGCATGATCTTTCTATGTCACATTCTGATCATAAACTACATTCATCTACTGAAAAGAAGCATCATTCTCCCAAGTTAAAGATTAAACATCATGAACAACATAGTCACGAACAACATGGTGATGAGGCAAAGCATAACCACGAACAACATGGTGTTGAGGCAAAGCATCACCACGAACAACAGGGTGTTGAGGGAAGACGTCATCATCAGGAACATCATGAACGTCACCCTGAACATCATGGTCACGAGGGAAAGCATGCAAAGGCAAGTGTAGCAGCTAAGTGGATTCCAAGTAACAAGGGTTCTTACCAGGATTCAATGCATGTATATTATCCAGCGTCAAGCCCCCATTACGTACCAACGAGTCCTCGAGGAAGGTCTCATAGTATTTCCCATCTTTCTGAGTTGAAAAGTCCTAAAGGGAGGAGCACTTCAAAATCTTTAGAACATATAGAACTTGATACTACCTCTCCATCGTCATCCTCACCTTCAGTTAAAGACCCACCTCTTGAGTCAACCACTCAAGAACCACACCTTAATTCAAATCCAATACTTCTGCCAGTACCTCCTCCACCCCCACCCCCACCCCCATCTAGTAGACTACCTACAACTCCTCCCCCTCCGCCTCCACCCCCACCCCCACCCCCACCTCCATCTAGTAGACTACCTACAACTCCTCCTCCTCCTCCTCCCCCTCCACCCCCACCCCCACCTCCATCTAGTAGACTACCTACAACTCCTCCTCCTCCCCCTCCTCCTCCCCCTCCACCCCCACCCCCACCCCTATCTAGTAGACTACCTACAAACTCTCCTCCTCCTCCTCCTCCTCTCCCACCCCCACCCCCTTCAATATCATCTTTTGACCATAGAGACAAGTCTGTTTATCCATCCGTATCTGTAGTTGGGGAATTATCAAATGTAGTCTCCCTTTCTAATTCACCACCACCATCATTAACAACACCACCCCCTCCACCTCCACCACTACCACCACCTTTTTCAAAATATGGAGTTCCAACAATTCCTCCATCTTCCCCTCTCTATATTCCTTTTACACAAGAAGATCCTAGACATCTTCCCTTGCCGACCTCCACTACATTGTTTCAAATTCCACCACCACCACCTTTACCACCATCATCCTTGACTTTACCATCCTTCACTAATGTAGATAGTAATCCACCACCACCCCCTCTTTTACCTGAATGTCTACCAACACAACCTCCATCTCCCTTGATTACATGTCCACCACCGCCACCGCCACCACCGCCACCACCACCACGGCCTCTACCCCCACCCATTTCAAGTAAGGCTTCACCGCCACCACTACATTCTTCTCCATTAAATGAATTACTTGAAACACCACCACCACTATTTCCTTCATCAAGTGGAGCACCACCTATACCACAACCTCCTCCACCAACACCAGCACTTCCTTCATCAAGTGGAGAACCACCTGCTCCTCCATCAAATGCACCACTATCAACACCACCATCCCCTCCGTTATCAAGTGGAGCACCACCACTACCATCACTACTTGCTTCATCAAGTGGTGCACCACCTATACTACCACCAGCTCTTCCTCTATCACACGAAGCAGCAGCACCACCACCATCACTTCCTTCGTTAAGTGTAGCACTACACATGCCACTACCTCGCCCTCCTCCACCAATTTATAGAAATCAACCTCCTCCACCTCCTCCAATGAATGAATCACCCTCTCCTCCACCCACTCCTCCGCCTACTCCTCCGCAACCTCCAATGCATGCTATATCCCCTCTGACAATGCATGCAGCACTATCTCCTCCCCCACCTTCTCCGCCACCTAGTGCTCCTCCCTCACCTCCGAAGCCTGCAGCACTACCTCCTCCACCACCTTCCACGCATGCAGCACTATCACCTTCGGCAGCTCCGAATCATACAACACCACCTCCAATGCATTCAGCACCACCACCTCCGCCACCTCCTCCCCCACCTCCAACGCATTCAGCACCACCACCTCCGCCACCTCTGCCACCTCCTCCCCCACCTCCAATGCATTTGGCACCACCACCTATGCCACCTCAGATGCCTGCAGCACCACCTCCTCCCCCACCTCCAATGCATTCAGCACCACCACCTCCGCCACCTCCGCCACCTCCTCCCCCACCTCCAATGCATTCAGCACCACCACCTCCGCCACGTCCGCCACCTCCTCCCCCACCTCCAATGCATTTGGCACCACCACCTATGCCACCTCAGATGCCTGCAGCACCACCTCCTCCCCCACCTCCAATGCATTCAGCACCACCACCTCCGCCACCTCCGCCACCTCCTCCCCAACCTCCAATGCATTTGGCACCACCACCTATGCCACCTCCGATGCCTGCAGCACCACCTCCTCCGCCACCTCCTCCCCCACCTCCAATGCATTCAGCACCACCACCTCCGCATGCACCACCACCACCTCCGCCACCTCCGATGCATGCAGCACCACCTCCTCCTCCGCCACCTCCGCCGTCTACAATGCATGCGGCGTCACCTCAGATGCATGGAGCAACACCTCCTCCACCACCTCGGGTAAATGCAGCACCACCACCTCCGCCGCCTCCGATGCATGTAGCGCCACCTCCAGTGCGTGGAGCAGCACCTCCTCCGCCACCTCCTCCACCTCCAATGTCAGGAGCGCCACCACCTCCAATGCCCAGAGCGCCACCACCTCCACCACTTCCAGGAAGCCGCGGCCCACCTCCGCCACCTCCAATGCCCGGAGCGCCACCTCCTCCACCTTCTTCAATTCCCGGAGCACCACCGCCACCTCGAATGCCCGGAGCGCCACCACCTCCACCTCGAATGCCCGGAGCACCACCGCCACCTCCGATGCCAGGAGCGCCACCTCCTCCACCTCGATGCCCGGAGGGCCTCCACCTCCTCCAATGCCTGGAGCACCTCCGCGAGGACCAGGCCCTCCTCCGCCTCCTCCTCCTGGAGTTGGTGGCCCAGGCCCACCTCCGCCTCCTGGTAGTCTTCCAGGTGGTGGACCTCCACCGCCTCCCATGGGAAGAGGTGGTGGAGCTGCTAGAGGGCGTGGGCTCACACGTAATACAGCGATGCCTCGACGATCCCCTTTTAAGCCTTTGCATTGGAGTAAGGTTAGCAGGGCAATGCAAGGGAGCTTATGGGAAGAATTGCAAAGAAGTGCGGAACTTCAAACGTAATCATTTGAATTTCCATTCTCTCTCTATATAA 5031 0.5035 MLLIFVMYFFSVFDCCFSANVLEEEAYRDYIGNIVAQLKNQYFTDASIMVFNFRERETRSQMSDVLAQFDMLTVMEYPRQYAGCPLLPLELVHHFFRSSESWLSVEGQHNVVLLHCERGGWLVLAFMLAGFLLYRGQYTGELKTLEMMYKQASREVLRLFSPLNPQPSQLRYLQYVSRRQLGSEWPPQETPLLLDYLILRNLPLFDGGEGCRPIVRVYGPDPTRPANSSSNILFETPGSLIQHYPQAECTLVKIDIHCRVQGDVVLECIHLSEDLVGEEMIFRIMFHTAFVRSNTLILSRDDIDIVWDSKEQFPKDFKAEVLFLDAYALVHNLSPINVSRDVNDSESDSPDEFYEVEEIFTNAIDALEGRGEFGSPMVRDDRSHIDIWKDSSDPQASTSDDGSHQQEVRRVEFDPQASTSDDGNHQQEVERIASISDDGNHQQEVGRVESDPQASISDDGNHQQEVGRVESDPQADPQASISDDGNHQQEIGRVESDPQASTSDDGSHQQEVRRVEFDPQASTSDDGNHQQEVGRVESDVNIVKDIVIDDVKYKFQEMTDSDPHEVKDIVVDEVEIKSNSIADKMNLQDEVTIMHKNFDEKEEKHDLSMSHSDHKLHSSTEKKHHSPKLKIKHHEQHSHEQHGDEAKHNHEQHGVEAKHHHEQQGVEGRRHHQEHHERHPEHHGHEGKHAKASVAAKWIPSNKGSYQDSMHVYYPASSPHYVPTSPRGRSHSISHLSELKSPKGRSTSKSLEHIELDTTSPSSSSPSVKDPPLESTTQEPHLNSNPILLPVPPPPPPPPPSSRLPTTPPPPPPPPPPPPPPSSRLPTTPPPPPPPPPPPPPPSSRLPTTPPPPPPPPPPPPPPPLSSRLPTNSPPPPPPLPPPPPSISSFDHRDKSVYPSVSVVGELSNVVSLSNSPPPSLTTPPPPPPPLPPPFSKYGVPTIPPSSPLYIPFTQEDPRHLPLPTSTTLFQIPPPPPLPPSSLTLPSFTNVDSNPPPPPLLPECLPTQPPSPLITCPPPPPPPPPPPPRPLPPPISSKASPPPLHSSPLNELLETPPPLFPSSSGAPPIPQPPPPTPALPSSSGEPPAPPSNAPLSTPPSPPLSSGAPPLPSLLASSSGAPPILPPALPLSHEAAAPPPSLPSLSVALHMPLPRPPPPIYRNQPPPPPPMNESPSPPPTPPPTPPQPPMHAISPLTMHAALSPPPPSPPPSAPPSPPKPAALPPPPPSTHAALSPSAAPNHTTPPPMHSAPPPPPPPPPPPTHSAPPPPPPLPPPPPPPMHLAPPPMPPQMPAAPPPPPPPMHSAPPPPPPPPPPPPPPMHSAPPPPPRPPPPPPPPMHLAPPPMPPQMPAAPPPPPPPMHSAPPPPPPPPPPPQPPMHLAPPPMPPPMPAAPPPPPPPPPPPMHSAPPPPHAPPPPPPPPMHAAPPPPPPPPPSTMHAASPQMHGATPPPPPRVNAAPPPPPPPMHVAPPPVRGAAPPPPPPPPPMSGAPPPPMPRAPPPPPLPGSRGPPPPPPMPGAPPPPPSSIPGAPPPPRMPGAPPPPPRMPGAPPPPPMPGAPPPPPRCPEGLHLLQCLEHLREDQALLRLLLLELVAQAHLRLLVVFQVVDLHRLPWEEVVELLEGVGSHVIQRCLDDPLLSLCIGVRLAGQCKGAYGKNCKEVRNFKRNHLNFHSLSI* 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0007 1676 MobiDBLite consensus disorder prediction 446 462 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 910 1564 - -
Amo20g0007 1676 Gene3D Protein tyrosine phosphatase superfamily 3 195 IPR029021 -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 1239 1438 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 633 692 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 968 983 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 388 408 - -
Amo20g0007 1676 SMART PTEN_C2_2 187 1596 IPR014020 -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 918 948 - -
Amo20g0007 1676 ProSiteProfiles C2 tensin-type domain profile. 189 326 IPR014020 -
Amo20g0007 1676 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 188 323 IPR035892 -
Amo20g0007 1676 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 72 177 IPR029021 -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 1199 1232 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 1149 1191 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 1060 1108 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 599 620 - -
Amo20g0007 1676 Pfam C2 domain of PTEN tumour-suppressor protein 188 323 IPR014020 -
Amo20g0007 1676 PANTHER FORMIN-J 12 836 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 1122 1136 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 434 539 - -
Amo20g0007 1676 PRINTS Proline rich extensin signature 759 771 - -
Amo20g0007 1676 PRINTS Proline rich extensin signature 796 812 - -
Amo20g0007 1676 PRINTS Proline rich extensin signature 831 856 - -
Amo20g0007 1676 PRINTS Proline rich extensin signature 774 795 - -
Amo20g0007 1676 PRINTS Proline rich extensin signature 813 830 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 786 888 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 753 784 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 599 894 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 991 1041 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 475 506 - -
Amo20g0007 1676 Gene3D - 196 323 - -
Amo20g0007 1676 MobiDBLite consensus disorder prediction 1445 1564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0007 Amo-Chr20 69219 74412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0007 12 450 FH2 protein (formin) Gene Family AT5G07740 57.205 4.16e-156 517