Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0005 ATGTCAATGACTATGTCTGGGAAAAAGAATCAGACGGATTGCCGTGGGACACACTTCGCCATGTTTACGAGCTTGTGCAGAGTGGCAATGAAGCATTTCGAGAGAATAGAATGGAAGAGGCAAATCAGCTTTTATTCGCGAGCCAATAACATTAAATCTGGTGATATGGTCATCCTCGGCAATCGCTGTGCAGCTTATATTAGGATTAGTCAATATTTAAAGCATAGAACTCCATCGGCTTCGGAACATAGACCATTGAGTGGGCTTGATCCTACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTGCAAAGTAATTCAGCTAATCCTTACATTTTAAAGGCCCATGCACTTCTTTTGTTGGAGAAATATGAGAAAGCCAGGGATGTTATTCTTTCCGGTCTACAAGTCGATCCATTTAGCAATCCTCTTCAAGCTTCTCTTCGAAATTTGGAAAGACTGCCATCTCATTCAACAAGGATGGATAGACATGCACAACCAGAGCGAAACGATGAGTTTGATTGCACTCTCTGCCTGAAGTTGCTGTATGAACCTGTTACAACCCCTTGTGGACATTCCTTTTGCCGTTCATGTCTATTTCAGTCAATGGATTCTGGGAACAGATGCCCTTTGTGCAGGACAGTTCTGTTTATTAGTCCAAGAACATGTTCAATCAGTGTGACATTGAAGAACATCATAGAGAAGAACTTTCCTGAGGAGTATGCAGAACGGAAACAAGAGCATGACAGTTTAATCAACCCTGGTGTAGATTTGCTGCCCCTCTTTGTTATGGATGTTGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGATTGATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATCACTGATTCTTCAACAGGTTCCTTAGCCGAGTATGGCTGTGAAGTGGAAATCACTGAGTGTGAGCCACTTCCAGATGGTCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATCATCCGTTCATGGGATCAGGATGGGTATCGTGTTGCTCAGGTTGAATGGGTTCAGGATATTATGCCAGCAGAAGGGACAAAAGAAAGAGAGATTTTACAGGAATTGACATGTAATGCAGCAGAAAATGCTCGATCGTGGATAAGAAGAGCTAGAGAAGCAACAAGACTAGATCCAAGAAGAATCGAGAGACTCCTGAATGTTGAAGCGATGATGCCATCGACACGAGACCCTGAGCGTTTCAGTTTTTGGCTGGCTACCCTATCGAACCGAAGGCCTTCGGACAGATTGGATCTCCTTCGCATAAGAGATACCACAGAGAGGATTAGACGAGGCCTTATATTTCTTAGAGCAGAGGAACAAGGCTGCAGAATTCAGTAA 1413 0.4317 MSMTMSGKKNQTDCRGTHFAMFTSLCRVAMKHFERIEWKRQISFYSRANNIKSGDMVILGNRCAAYIRISQYLKHRTPSASEHRPLSGLDPTTLAELGLKDAEKLVDLQSNSANPYILKAHALLLLEKYEKARDVILSGLQVDPFSNPLQASLRNLERLPSHSTRMDRHAQPERNDEFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDSGNRCPLCRTVLFISPRTCSISVTLKNIIEKNFPEEYAERKQEHDSLINPGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVITDSSTGSLAEYGCEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAQVEWVQDIMPAEGTKEREILQELTCNAAENARSWIRRAREATRLDPRRIERLLNVEAMMPSTRDPERFSFWLATLSNRRPSDRLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0005 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 258 IPR013083 -
Amo20g0005 470 Gene3D - 262 364 IPR046336 -
Amo20g0005 470 ProSitePatterns Zinc finger RING-type signature. 195 204 IPR017907 -
Amo20g0005 470 SMART lon_5 263 462 IPR003111 -
Amo20g0005 470 Gene3D - 404 462 - -
Amo20g0005 470 SUPERFAMILY TPR-like 25 150 IPR011990 GO:0005515
Amo20g0005 470 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 21 463 - -
Amo20g0005 470 Pfam ATP-dependent protease La (LON) substrate-binding domain 264 460 IPR003111 -
Amo20g0005 470 SUPERFAMILY RING/U-box 174 243 - -
Amo20g0005 470 Gene3D Tetratricopeptide repeat domain 18 161 IPR011990 GO:0005515
Amo20g0005 470 ProSiteProfiles Lon N-terminal domain profile. 261 462 IPR003111 -
Amo20g0005 470 SMART ring_2 180 217 IPR001841 -
Amo20g0005 470 PANTHER RING FINGER PROTEIN 127 21 463 - -
Amo20g0005 470 Pfam Zinc finger, C3HC4 type (RING finger) 180 217 - -
Amo20g0005 470 ProSiteProfiles Zinc finger RING-type profile. 180 218 IPR001841 -
Amo20g0005 470 SUPERFAMILY PUA domain-like 264 460 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0005 Amo-Chr20 54182 60056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0005 178 225 C3H Transcription Factor Family AT2G42030 41.509 6.79e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0005 - - gmx:100802277 710.679