Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0004 ATGAGGGGTCGTAGGAGGATGAGGAAGATCCGTTTGAGCAAGATCTATTCATTTGCATTATGTGGTAAAGGAACCTTAGAGGGAGAACATTCACAGATTGGGGGGCAGGGTTTTTCCAGGGTGGTGTTCTGCAATGAGGAAGGGGTTATGCAAAATTATTCAGATAATTCTGTAAGATCCACAAAATATACTGCTGTCAGTTTCTTGCCAAAGTCACTGTTTGAGCAGTTTAGGAGGGTTGCTAATTTCTATTTCTTGGTCATTGGTGTCTTGGCAATGACAAAGCTTGCTCCSTACACTGCTGTCAGCGCAATCGTTCCTCTCTGTGTCATCGTTGGGGCGACCATGATCAAAGAGGGTATTGAAGATTGGCGTCGCAAGACACAGGATATTGAGGTGAACAATAGAAAAGTCAAAGTGCATAAAGGTGATGGTGTTTTTGAATATACCGAATGGAAGAATCTGAGGGTGGGGAATATAGTTAAGGTAGAGAAGGATAATTTTTTCCCTGCAGACCTCCTATTGCTTTCATCCAGTTATGAGGATGCAGTGTGTTATGTTGAGACCATGAACTTAGATGGAGAGACAAATTTGAAGTTAAAACAAGGATTGGACGTAACTTCTTCCTTACAGGACGACTCCAACTTCCGTGATTTTAAGGCTGTAGTTAAATGTGAAGACCCAAATGCAAATTTGTACTCATTTGTTGGGAGCCTGGAGTTTGAAGAGCAAAAATATCCCCTTTCTCCTCAGCAACTTCTTTTGAGAGACTCCAAACTTCGAAATACAGACTATGTATTTGGAGCCGTCATCTTCACTGGTCATGACACCAAGGTCATTCAAAACTCTACTGACCCCCCTTCGAAAAGAAGCAAAATTGAGAGAAAGATGGACAGGATTATTTACTTCTTGTTTTGTCTTTTGTTTCTAATTGCATTTGTTGGATCTATCCTCTTTGGCATTGCAACTAAGGATGACTTGGACAACGGGGTGATGAAAAGATGGTATCTGAGGCCCGATGATTCCACGATATTCTTTGATCCAAAAAGAGTCGCTTCAGCTGCCATATTTCATTTTTTGACTGCTTTAATGTTATACGGCTTCTTCATTCCTATCTCCTTGTATTTTTCTATCGAATTGGTGAAAGTCCTTCAAAGCATCTTCATCAATCAAGATGTCCATATGTACTATGAAGAAGCAGACAAGCCAGCCCATGCCCGCACTTCAAACTTGAATGAGGAACTAGGCCAAGTTGATACTATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCCATTGCTGGAGTAGCTTATGGCCRAGGTGTTACAGAGGTTGAGCAGGCCATGGATAGAAAAATTGGTTCTCCTTTGACTCATGAGCAGGTTTATGGGACAGAATCAGAATCAGATGAAAACAGGAAGTCTTCTGATAGAAAAACACGCATCAAAGGTTTTAACTTTACGGATGAAAGGATAATGAATGGGAACTGGGTTAATGAGCCTCATGCAGATGTTATACAGAAATTTTTTCGCGTATTGGCAATCTGTCACACCGCCATACCGGAAGTGGATGAAGATACAGGAAATGTCTCATATGAGGCTGAATCTCCAGATGAAGCTGCGTTTGTGATTTCTGCTAAAGAAATTGGTTTTGAATTCTTTAAAAGGACTCAGACTAGTTTATCAGTTAATGAATGGGATCCAGTTTCTGGAAACAAAGTGGAAAGAATGTACCAGCTTCTTAATGTATTAGAATTCAATAGCTCAAGGAAGCGAATGTCGGTAATAGTAAAAGATGAAGAAGGGAGAATTTCGCTACTCTGTAAAGGKGCTGACAGTGTCATGTTTGAAAGGCTTGCCTTGAATGGGAGAGAGTTTGAAGATAAAACCTTGGAGCATGTGCAGCAATATGCTGATGCAGGTCTAAGGACCCTGATACTGGCCTATCGTGAACTTGATGAGAATGAATACAAGGAGTTCAATAATGCATTTTACGAAGCAAAAAATTCAGTTACTGCAGATCAGGAGACGCTAATTGAGGAAGTATCAAATAGAATTGAGAGGAATCTAATCCTTCTAGGTGCCACTGCTGTAGAGGACAAGTTACAAAATGGGGTTCCTGATTGCATTGAAAAGCTTGCTCGTGCTGGAATTAAGATTTGGGTTTTAACTGGGGACAAAATGGAGACTGCCATTAATATTGGTTTTTCCTGTAGTTTGCTTAGACAAGGGATGAGACAGATTATAATTCATTTGGATGCTCCAGAAATTCAAGCATTGGAGAAGGGTGGTGACAAGATGGCTATTTCCAAGGCATCAAGGGAAAGTGTCCACCGTCAGATATCAGAAGCTGCTTTCCAGCTTACTGCATCCAGAGGAGCCTCTCAGCAGGCATTTGCTCTGATTATTGATGGAAAGTCACTTGCATATGCTCTGGACGATAGTATGAAGAACATGTTTCTGGAGCTCGCAATTCGTTGTGCATCAGTTATCTGCTGTCGCTCGTCACCCAAGCAAAAGGCACTGGTTACTAAATTAGTCAAATCTGGAACCCGTAAAACAACTTTAGCTATTGGGGACGGAGCTAATGATGTGGGAATGCTTCAAGAAGCAGATATAGGGATTGGAATCAGTGGTTTCGAAGGGATGCAGGCTGTGATGTCCAGTGATATTGCAATCGCACAGTTCTGGTATTTGGAAAGATTGCTTCTTGTACATGGTCATTGGTGTTACCGGAGGATATCATCAATGATTTGTTACTTTTTCTACAAGAACATCACATTTGGCTTCACTTTATTCTTGTACGAGGTGTATGCATCCTTCTCTGGAGAGCCTGCATACAATGATTGGTTTTTGTCTCTCTACAGTATCCTCTTTTCGTCGCTTCCCGTGATTGCCCTTGGGGTCTTTGATCAGGATGTATCCGCGAGGTACTGTCTAAAGTTTCCTAAATTATACCAACAAGGAGTGCAAAATGTCCTCTTCCGCTGGCGCCGGATCCTCAGCTGGATGCTCAACGGATTCATTAGTGCGACAATGGTTTTCTTCTTTTGCATAAAAGCGATGGAGGTTCAGGCCTTCGATGAAAAGGGAAGAACCGCAGGGCGTGATATATTGGGAGCAACCATGTACACTTGTGTAGTTTGGATTGTGAACCTGCAGATGGCACTTACTATAAGATACTTCACATTGATTCAACACATTTTCATCTGGGGTTCCATTGCTCTGTGGTATCTRTTCCTCCTTGTGTACGGAGCAATGCCTTCCAAGATTTCAGGAAATGCATACAAAGTCTTCATYGAGACGCTGGCTCCTTCACCTTCCTATTGGTTTGTGACATTCTTTGTGGTGTTCTCAACACTTATACCATACTTTTCATACTCAGCAATTCAGATGAAGTTCTTTCCCATGTACCATGAAAGGGTACAGTGGATAAGGTATGAAGGAAAGAAGAAAAACAATGATCCTGAAAACCATGTGTTGCGGCAGAAGTCATTGCAGCTAACAACTATGGGTTCAAATGCAGGTTTTGCAGCTAATGTTAATCATAGTATAGATATAGATACAGATGTAGATAGAACAACCAACAGAAGATGA 3621 0.4134 MRGRRRMRKIRLSKIYSFALCGKGTLEGEHSQIGGQGFSRVVFCNEEGVMQNYSDNSVRSTKYTAVSFLPKSLFEQFRRVANFYFLVIGVLAMTKLAPYTAVSAIVPLCVIVGATMIKEGIEDWRRKTQDIEVNNRKVKVHKGDGVFEYTEWKNLRVGNIVKVEKDNFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDVTSSLQDDSNFRDFKAVVKCEDPNANLYSFVGSLEFEEQKYPLSPQQLLLRDSKLRNTDYVFGAVIFTGHDTKVIQNSTDPPSKRSKIERKMDRIIYFLFCLLFLIAFVGSILFGIATKDDLDNGVMKRWYLRPDDSTIFFDPKRVASAAIFHFLTALMLYGFFIPISLYFSIELVKVLQSIFINQDVHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGXGVTEVEQAMDRKIGSPLTHEQVYGTESESDENRKSSDRKTRIKGFNFTDERIMNGNWVNEPHADVIQKFFRVLAICHTAIPEVDEDTGNVSYEAESPDEAAFVISAKEIGFEFFKRTQTSLSVNEWDPVSGNKVERMYQLLNVLEFNSSRKRMSVIVKDEEGRISLLCKGADSVMFERLALNGREFEDKTLEHVQQYADAGLRTLILAYRELDENEYKEFNNAFYEAKNSVTADQETLIEEVSNRIERNLILLGATAVEDKLQNGVPDCIEKLARAGIKIWVLTGDKMETAINIGFSCSLLRQGMRQIIIHLDAPEIQALEKGGDKMAISKASRESVHRQISEAAFQLTASRGASQQAFALIIDGKSLAYALDDSMKNMFLELAIRCASVICCRSSPKQKALVTKLVKSGTRKTTLAIGDGANDVGMLQEADIGIGISGFEGMQAVMSSDIAIAQFWYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGEPAYNDWFLSLYSILFSSLPVIALGVFDQDVSARYCLKFPKLYQQGVQNVLFRWRRILSWMLNGFISATMVFFFCIKAMEVQAFDEKGRTAGRDILGATMYTCVVWIVNLQMALTIRYFTLIQHIFIWGSIALWYLFLLVYGAMPSKISGNAYKVFIETLAPSPSYWFVTFFVVFSTLIPYFSYSAIQMKFFPMYHERVQWIRYEGKKKNNDPENHVLRQKSLQLTTMGSNAGFAANVNHSIDIDTDVDRTTNRR* 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0004 1206 Pfam Cation transport ATPase (P-type) 535 626 - -
Amo20g0004 1206 SFLD C1.7: P-type atpase like 404 917 - -
Amo20g0004 1206 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Amo20g0004 1206 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Amo20g0004 1206 Gene3D - 697 904 IPR023214 -
Amo20g0004 1206 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1193 - -
Amo20g0004 1206 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Amo20g0004 1206 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 500 702 IPR023299 GO:0000166
Amo20g0004 1206 SUPERFAMILY Calcium ATPase, transduction domain A 137 281 IPR008250 -
Amo20g0004 1206 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 53 1151 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Amo20g0004 1206 Pfam Phospholipid-translocating P-type ATPase C-terminal 894 1144 IPR032630 -
Amo20g0004 1206 Gene3D - 114 284 - -
Amo20g0004 1206 SFLD p-type atpase 404 917 IPR044492 -
Amo20g0004 1206 Gene3D - 567 680 IPR023299 GO:0000166
Amo20g0004 1206 SUPERFAMILY HAD-like 417 921 IPR036412 -
Amo20g0004 1206 Pfam Phospholipid-translocating ATPase N-terminal 44 104 IPR032631 -
Amo20g0004 1206 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1193 - -
Amo20g0004 1206 MobiDBLite consensus disorder prediction 472 488 - -
Amo20g0004 1206 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1144 IPR023298 -
Amo20g0004 1206 CDD P-type_ATPase_APLT_Dnf-like 55 1026 - -
Amo20g0004 1206 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 837 948 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo20g0004 1206 MobiDBLite consensus disorder prediction 464 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0004 Amo-Chr20 33053 39646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0004 10 1187 Primary Pumps ATPases AT1G68710 71.546 0.0 1821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0004 K01530 - gmx:100811892 1948.71