Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4546 ATGGTGGAAGGATATCTTGTTCCAAATATGATTAGCAATTCCAATTCATTAATGTTGATGATGGTATTAATACTGGTTGGCACGGTGCCGGGGATATGCCACGGTGAAGATGGGTGTGGAGGACACAGGTGCGGATGCCATGGCCCTCCAATTCGATTCCCATTCCGTCTTAAAGACAAGGAGCCCCCTCACTGTGGTTACCCTGCCTTTGATCTCACTTGTTCTGATTCTCATGATACCTTCATTGAGTTCTCTGCTTCTCCTGTCCCACTTAAACTCCTTGTCACTGATATCCAATATGAATATAACTCTTTCCAAGTCTCTGACACGCAAAATTGCCTTCCCGCCCACTTGCTCAAACTCATAAAAAATTCTTCCTCAATTTCTCCTTTCCAGTTCAGTCGGGATCAAACTCTGAACGATATATCTTTCTTCAATTGTTCACCTGATCCGCAATATCAACTCTCCTGCCCCATTTACGTTGCTGACAGCTACGATTTACTCCTCAGTTCCAATCTCGTATCTTGCACCAAGATTTTTGACATTTCTTCAACCTTCTATGACCCACAATTAGTAGTTTGGTACAATACTTTGGATTTGTTGTGGTCGAAACCTAATTGTAGCATGTGTGAAACACAAGGCAAGAGATGTAAACTGAAGAACAATGGCACTCAAGGTGAAGTTGAGTGCTTCGGCCACCATCATAATAACTTGCTCTTCGGTTCTACAGGTGTTGTGGCAGGTTTAATTCTGCTGGCAGCAGTGGCTATTGCAGTGTTTAAGATCTATCAACATTTTAGAATGAAAGGAGAAGATCGAGCAAGAATTGACAAGTTCTTGGAAGATTACAGGGCACTCAAGCCTACCAGATTCTCTTATKCTGATRTAAAGAGGATCACAAATGGTTTCAAGGACAAGCTGGGTGAAGGAGGTCATGGAGCAGTCTTCAAGGGCATGCTCTCCTCRGAAATYGGCGTAGCTGTWAAGATACTCAACAGCAACACRGAGGGTRAAGGRAAAGATTTCACCAACGAGGTGGGAACCATGGGMAAAATTCACCATGTCAATGTGGTTCGCTTACTTGGCTTTTGTGCGCAAGGAKTTCATTGTGCTCTAGTTTATGATTTCTTTCCAAAAGGTTCATTGCAAAACTTCATATCCACGCCAGATAACAAGGACGTCTTCCTTGGATGGGAGAAGCTTCACCAAATTGCCCTTGGTGTTGCTAGAGGCATTGAGTATCTTCACCATGGTTGTGAGCAACAGATCCTTCATTTTGACATCAATCCCCACAATATCTTACTAGATGACAACTTCACTCCCAAGATTACTGATTTTGGGCTTGCCAAGTTGTGTTCCAAAGATCAGAGCAAAGTTTCAATGACAGCAGCCAAGGGAACCATGGGCTACATTGCGCCTGAAATTGTCTCAAGAAACTTTGGAAATGTGTCTTACAAAGCAGACATTTATAGCTATGGGATATTGTTGCTTGAAATGGTAGGAGGAAGGAAAAACATAGAGATGGAAGTTGAGGGGTCTTTAAGGATTTTATACCCCGAATGGGTGCACAATTTGCTTGATGGGGGAGATTTTCAAGTACACATTGAAGATGAGAAAGACAATAAACTTGCAAAGAAAATTGCAATTGTTGGACTACAATGCATTCAGTGGCAGCCATCAGATCGTCCTTCCATCAAAACTGTCATAAGTATGTTAGAAGGAGATGCAGACAAATTAAGTGTACCTCGTAATCTTTTCGACTTAACAAACTCTATTAGCAGAGGACGACGAATAACCCACCAGACAAGGCCTTTAAATTTAGAGTTGGAGAGGATTGAAGAATTAGATCATTGTCAAACAAGTCCTTTCTAA 1872 0.4177 MVEGYLVPNMISNSNSLMLMMVLILVGTVPGICHGEDGCGGHRCGCHGPPIRFPFRLKDKEPPHCGYPAFDLTCSDSHDTFIEFSASPVPLKLLVTDIQYEYNSFQVSDTQNCLPAHLLKLIKNSSSISPFQFSRDQTLNDISFFNCSPDPQYQLSCPIYVADSYDLLLSSNLVSCTKIFDISSTFYDPQLVVWYNTLDLLWSKPNCSMCETQGKRCKLKNNGTQGEVECFGHHHNNLLFGSTGVVAGLILLAAVAIAVFKIYQHFRMKGEDRARIDKFLEDYRALKPTRFSYXDXKRITNGFKDKLGEGGHGAVFKGMLSSEIGVAVKILNSNTEGXGKDFTNEVGTMGKIHHVNVVRLLGFCAQGXHCALVYDFFPKGSLQNFISTPDNKDVFLGWEKLHQIALGVARGIEYLHHGCEQQILHFDINPHNILLDDNFTPKITDFGLAKLCSKDQSKVSMTAAKGTMGYIAPEIVSRNFGNVSYKADIYSYGILLLEMVGGRKNIEMEVEGSLRILYPEWVHNLLDGGDFQVHIEDEKDNKLAKKIAIVGLQCIQWQPSDRPSIKTVISMLEGDADKLSVPRNLFDLTNSISRGRRITHQTRPLNLELERIEELDHCQTSPF* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4546 623 Pfam Wall-associated receptor kinase galacturonan-binding 43 109 IPR025287 GO:0030247
Amo19g4546 623 PANTHER RECEPTOR-LIKE KINASE 28 609 - -
Amo19g4546 623 Pfam Protein kinase domain 304 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4546 623 ProSiteProfiles Protein kinase domain profile. 301 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4546 623 Gene3D Transferase(Phosphotransferase) domain 1 377 584 - -
Amo19g4546 623 SUPERFAMILY Protein kinase-like (PK-like) 284 573 IPR011009 -
Amo19g4546 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 28 609 IPR045874 GO:0004672
Amo19g4546 623 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Amo19g4546 623 Gene3D Phosphorylase Kinase; domain 1 277 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4546 Amo-Chr19 162826401 162828376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4546 14 582 Receptor kinase-like Gene Family AT5G38260 35.714 1.10e-93 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo19g4546 Pkinase 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4546 - - aip:107619931 1230.31