Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4545 ATGTGGATATGGTGCGAGGTAGGAATAAGCATTGTTTTGGTGTTACACCAAAGTTTGGTTGCCGGACAAAGGCAGAGCTGCGTGCCATCATCGTGCGGCAAAATTGCAAACATAAGTCATCCTTTCCGATTGAAAGATGACCCGGCGAATTGCGGGGACAGCAAGTACGAACTAGAATGCGTGAACGACGTGGCAATGTTACGGTTAACAGAGGAAGCAGATTACAAAGTGGAGGCCATAAATTACAACAACTACACAATCAGGTTAGTAGATCCCAACATTCAAGAGGATAATTGCTCCTCCCTCCCCCGCTACTTCTTGTACAGATTCAATTTCAGCGCTGACCCCTACCGCGTCTACCCTGTTTCCAATCATTGGGATGTCGATAACGCATACCATGCCACTCAAATGCAAGGCCCAGTTCTTGGAGATTATATCCCGCTATTTGAGCACATAATATACGTGAACTGTATCACAGCAGTGAGAGACGTGGACAAGAATAACGCTTCTTCCTCCTGCTTGGATCTGAATACATACGTAGTTGCTGGAGAGTTAGGAGCCACAGGATCGATATGGAAGCCTGGATGCCGCATCAACAAAATTGCTGCCACCTCTGGCTTGTTTCAATTCCAAAAACAGCATCCCTACAATGGTTGGGAATGGAAGGGTGAAATGGAAAAGGATGTCGATGATCCAATAGCATACAGTGATGTTCATAAGGCGCTGGCTTATGGATTTGAGGTCTCATGGTTGCATGCTATTTGCCATGAGCACCACTGTGGACCGGGAGCTTGCTACTTCAACCACACCGCTCAAAACGTTCTCTGTTATTCTCTCTGTTCTTATTCAAAGGGAGGAGCCCGCCGCTGTGGGTTTTGGAAGCAACTTCGAAGCTACACTCTAGATTATTTGCATCCGTTTTTTTACGGAATGTACACTCTAATAAGGTTTAAAACTCCGAAAGATATATGGGAAACATCGTTTTTGGTTCATCCCAAGACAGCGCTCATGGGGTGGTACGGTCTATTATCATATATGGTAACAAGGATTCTGTTTGGGGTTGCATTATTAGTTGTATTATTGATCTACAAATGGCAAAGAAGAAATTTATCAACATATGTGAATATTGAGAATTTTCTACAAGATAATCACCTCGCTCCCATAAGGTACTCATATAGAGAAATTAAAAGTATGACACAAAATTTCAAGGTCAAATTGGGCCAAGGTGGTTTCGGCTCTGTGTACAAGGGCAAATTACGCAGTGGTCCTCATGTAGCAATAAAGATGTTGAAACAGTCCAAGACTAATGGTCAGGATTTTATTAATGAGGTTGCAACCATTGGGAGAATACATCATGTGAATGTGGTTCGACTCATTGGATTTTGTGTTGAAGGATCAAAGCGTGCACTTGTTTATGATTTCATGTCTAATGGTTCGCTTGATAAATATATTTTCTCTAAGGAAGAAAGCATTCATTTGAGTTCTGAGAAAATATATGAGATATCTTTGGGAGTAGCTCGCGGGATTTCATATCTTCATCGGGGTTGTGCTATGCAAATTCTACACTTTGATATCAAGCCCCATAATATCCTTCTTGATGAAAACTTCATCCCCAAGATTTCGGATTTTGGATTAGCTAAATTGTATCCCATAGATCGTAGCATTGTCACTTTAACTGACAAAAGAGGAACCATTGGCTACATTGCTCCGGAATTGTTTTACAATAACCTTGGTGGAGTCTCCTATAAAGCTGATGTTTATAGCTTTGGAATGTTGTTGATGGAAGTGGCAGGTAGAAGGAAGAATTTGAATCCACATGCTGAAAATTCAAGCCAAGTATTCTTTCCAACTTGGGTCTATGAACAAGTTAGCAAAGGAAAAGAAGTTGAATTGGACTGTAATGGAACAGAAGTTGAAAAGAGTATGGCAAAGAAGCTGATCATAACTGCATTGTGGTGTATACAACTCAAACCTTCCGATCGACCTTCAATGAACCATGTAGTAGAGATGCTTGAAGGAGAACTTTACAATCTAACAATGCCTCCGAAGCCTTTGTTATATCCAACTGAAAACTTGAATTCTGAACAAACCAGAGCAGGTCACTCAACAAATGCTGCAGGTGATTTTGGTGAAACTATCACTAGTAATGCTACACTAGAGAATAGCTTATCTGTAGTTGACTTTGAGTGTACTATCTGCACAAAACTGGCATCTCTGTATCTAATTAGAAACCACCAGAATCTTTTAGTTTCAATTAGCATGGTGGAAGGATATCTTGTTCCAAATATGATTAGCAATTCCAATTCATTAATGTTGATGATGGTATTAATACTGGTTGGCACGGGGCCGGGGATATGCCACGGTGAAGATGGGTGTGGAGGACACAGGTGCGGACGCCATGGCCCTCCGATTCGATTCCCATTCCGTCTTAAAGACAAGGAGCCCCCTCACTGCGGTTACCCTGCCTTTGATCTCACTTGTTCTGATTCTCATGACACCTTCATTGAGTTCTCTGCTTCTCCTGTCCCACTTAAACTCCTTGTCACTGATATCCAATATGAATATAACTATTTCCGAGTCTCTGACACGCAAAATTGCCTTCCCACCCACTTGCTCAAACTCATAAAAAATTCTTCCTCAATTTCTCCTTTCCAGTTCAGTCGGGATCAGACTCTGAACGATGTATCTTTCTTCAATTGTTCACCCGATCCGCAATATCAACTCTCCTGCCCCATTTACGTTGCTGACAGCTACGATTCACTCCTCAGTTCCAATCTCGTATCTTGCACCAAGATTTTTGACATTTCTTCAACCTTCTATGACTCAGAAATGGTAGATTTGTACAATACTTTGAATTTGTGGTGGTCGAAACCTAATTGTAGCATGTGTGAAACACAAGGCAAGAGATGTAAACTGAAGAACAATGGCACTCAAGGTGAAGTTGAGTGCTTCCGCCACCATCATAATAACTTGCTCTTTGGCTCCACAGGTTTAATTCTGCTGGCAGCAGTGGCTACTGCAGTGTTTAAGATCTATCAACATTTTAGAATGAAAGGAGAAGATCGAGCAAGAATTGACAAGTTCTTGGAAGATTACAGGGCACTCAAGCCTACCAGATTCTCTTATGCTGATGTAAAGAGGATCACAAATGGTTTCAAGGACAAGCTGGGTGAAGGAGGTCATGGAGCAGTCTTCAAGGGCATGCTCTCCTCAGAAATCGGCGTAGCTGTCAAGATACTCAACAGCAACACGGAGGGTAAAGGAAAAGATTTCACCAACGAGGTGGGAACCATGGGAAAAATTCACCATGTCAATGTGGTTCGCTTACTTGGCTTTTGTGCGCAAGGAGTTCATTGTGCTCTAGTTTATGATTTCTTTCCAAAAGGTTCATTGCAAAACTTCATATCCACGCCAGATAACAAGGACGTCTTCCTTGGATGGGAGAAGCTTCACCAAATTGCCCTTGGTGTTGCTAGAGGCATTGAGTATCTTCACCATGGTTGTGAGCAACAGATCCTTCATTTTGACATCAATCCCCACAATATCTTACTAGATGACAACTTCACTCCCAAGATTACTGATTTTGGGCTTGCCAAGTTGTGTTCCAAAGATCAGAGCAAAGTTTCAATGACAGCAGCCAAGGGAACCATGGGCTACATTGCGCCTGAAATTGTCTCAAGAAACTTTGGAAATGTGTCTTACAAAGCAGACATTTATAGCTATGGGATATTGTTGCTTGAAATGGTAGGAGGAAGGAAAAACATAGAGATGGAAGTTGAGGGGTCTTTAAGGATTTTATACCCCGAATGGGTGCACAATTTGCTTGATGGGGGAGATTTTCATGTACACATCGAAGATGAGGAAGACAATAAACTTGCAAAGAAAATTGCAATTGTTGGACTACAATGCATTCAGTGGCAGCCATCAGATCGTCCTTCCATCAAAACTGTCATAAGTATGTTAGAAGGAGATGCAGACAAATTAAATGTACCTCGTAATCTTTTCGACTTAACAAATTCTATTAGCAGAGGACGACAAATAACCCACCAGACAAGGCCTCTAAATTTAGAGTTGGAGAGGATAAAGATATTTTCAAAAAGTAGCAGTTACCTTCAAGTAGTAACAAATAAATAA 4134 0.4156 MWIWCEVGISIVLVLHQSLVAGQRQSCVPSSCGKIANISHPFRLKDDPANCGDSKYELECVNDVAMLRLTEEADYKVEAINYNNYTIRLVDPNIQEDNCSSLPRYFLYRFNFSADPYRVYPVSNHWDVDNAYHATQMQGPVLGDYIPLFEHIIYVNCITAVRDVDKNNASSSCLDLNTYVVAGELGATGSIWKPGCRINKIAATSGLFQFQKQHPYNGWEWKGEMEKDVDDPIAYSDVHKALAYGFEVSWLHAICHEHHCGPGACYFNHTAQNVLCYSLCSYSKGGARRCGFWKQLRSYTLDYLHPFFYGMYTLIRFKTPKDIWETSFLVHPKTALMGWYGLLSYMVTRILFGVALLVVLLIYKWQRRNLSTYVNIENFLQDNHLAPIRYSYREIKSMTQNFKVKLGQGGFGSVYKGKLRSGPHVAIKMLKQSKTNGQDFINEVATIGRIHHVNVVRLIGFCVEGSKRALVYDFMSNGSLDKYIFSKEESIHLSSEKIYEISLGVARGISYLHRGCAMQILHFDIKPHNILLDENFIPKISDFGLAKLYPIDRSIVTLTDKRGTIGYIAPELFYNNLGGVSYKADVYSFGMLLMEVAGRRKNLNPHAENSSQVFFPTWVYEQVSKGKEVELDCNGTEVEKSMAKKLIITALWCIQLKPSDRPSMNHVVEMLEGELYNLTMPPKPLLYPTENLNSEQTRAGHSTNAAGDFGETITSNATLENSLSVVDFECTICTKLASLYLIRNHQNLLVSISMVEGYLVPNMISNSNSLMLMMVLILVGTGPGICHGEDGCGGHRCGRHGPPIRFPFRLKDKEPPHCGYPAFDLTCSDSHDTFIEFSASPVPLKLLVTDIQYEYNYFRVSDTQNCLPTHLLKLIKNSSSISPFQFSRDQTLNDVSFFNCSPDPQYQLSCPIYVADSYDSLLSSNLVSCTKIFDISSTFYDSEMVDLYNTLNLWWSKPNCSMCETQGKRCKLKNNGTQGEVECFRHHHNNLLFGSTGLILLAAVATAVFKIYQHFRMKGEDRARIDKFLEDYRALKPTRFSYADVKRITNGFKDKLGEGGHGAVFKGMLSSEIGVAVKILNSNTEGKGKDFTNEVGTMGKIHHVNVVRLLGFCAQGVHCALVYDFFPKGSLQNFISTPDNKDVFLGWEKLHQIALGVARGIEYLHHGCEQQILHFDINPHNILLDDNFTPKITDFGLAKLCSKDQSKVSMTAAKGTMGYIAPEIVSRNFGNVSYKADIYSYGILLLEMVGGRKNIEMEVEGSLRILYPEWVHNLLDGGDFHVHIEDEEDNKLAKKIAIVGLQCIQWQPSDRPSIKTVISMLEGDADKLNVPRNLFDLTNSISRGRQITHQTRPLNLELERIKIFSKSSSYLQVVTNK* 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4545 1377 ProSiteProfiles Protein kinase domain profile. 400 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4545 1377 Gene3D Transferase(Phosphotransferase) domain 1 475 682 - -
Amo19g4545 1377 PANTHER RUST RESISTANCE KINASE LR10-RELATED 346 698 IPR045874 GO:0004672
Amo19g4545 1377 PANTHER RUST RESISTANCE KINASE LR10-RELATED 781 1358 IPR045874 GO:0004672
Amo19g4545 1377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Amo19g4545 1377 ProSiteProfiles Protein kinase domain profile. 1050 1328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4545 1377 SUPERFAMILY Protein kinase-like (PK-like) 386 672 IPR011009 -
Amo19g4545 1377 SMART serkin_6 400 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4545 1377 SMART serkin_6 1050 1321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4545 1377 Pfam Protein kinase domain 403 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4545 1377 Pfam Protein kinase domain 1053 1318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4545 1377 SUPERFAMILY Protein kinase-like (PK-like) 1033 1322 IPR011009 -
Amo19g4545 1377 Gene3D Phosphorylase Kinase; domain 1 376 474 - -
Amo19g4545 1377 Gene3D Phosphorylase Kinase; domain 1 1026 1125 - -
Amo19g4545 1377 PANTHER RECEPTOR-LIKE KINASE 781 1358 - -
Amo19g4545 1377 PANTHER RECEPTOR-LIKE KINASE 346 698 - -
Amo19g4545 1377 ProSitePatterns Protein kinases ATP-binding region signature. 406 428 IPR017441 GO:0005524
Amo19g4545 1377 Gene3D Transferase(Phosphotransferase) domain 1 1126 1334 - -
Amo19g4545 1377 Pfam Wall-associated receptor kinase galacturonan-binding 27 91 IPR025287 GO:0030247
Amo19g4545 1377 Pfam Wall-associated receptor kinase galacturonan-binding 792 862 IPR025287 GO:0030247
Amo19g4545 1377 ProSitePatterns Protein kinases ATP-binding region signature. 1056 1078 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4545 Amo-Chr19 162813309 162825458 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4545 20 687 Receptor kinase-like Gene Family AT5G38260 33.864 3.50e-102 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo19g4545 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4545 - - aip:107619931 1500.72