Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4537 ATGGATTCTCTTCTCTCACTCCAAACCCCAAGCAACAACCCACACCCTCATTCACCGCCAGGCCTCACCCCAACGCCGTTACGGTTACAACCAACACAAATGCCGTTACTAGTTCCAAAACCAGAGCCTCTCGACGATTTCTTCTTTTCTAATAATTCCCAACAACGCCCTCACTGGTTCCCTCACCAACAACAACCACAACCTAACAACAACGAGTTTGAGTTACACGCGCCACCGTTCGCGTCTTCTTCTCCAGAAGAACAAGAAGACTCCGAACTCTACAACCACTTCTTCCGAGTCTCTCAGCTCTTCCGTACAGCTTTCTCTGATACTCTCTTCCAAAAGGACGCCGTTCCGGAACCCGTGACGCCACAATTACAGTCACAGTCGCACTCGAATTTTCAAGATTCTCTTTCCTATGCTTCTAGTTCCCAACCTGAACCTGAGGCTGAGGTTGAGGCAACGCCCGAAGCGGATTCACGCGCCTTGGTTCCCGTTCCGCCATCTTCGTCGTTGGTCGTCGCGGCTCCTTCGAAGCGCGTGAGCAAGAAGAAGTTGCTGGTGAGGGTCTCCAAACTCCGCCTTCACGAGCAGCTTCATTTCCGTGAGGTCGTGAGGCGAACGAGAATGATCTACGACTCGATCCGCGTTCTCTGCACCATCGAGGAAGAGAAGCGCGTCCAGGAGGAGAAAAGAGCTGCCGAGGAGAAGAGAACTGCCGCCGTCGCTGACGTTGTTACTATTGCCGCTGATGAACCGTTCGCTGCATCTGAATCCACCATTGAATGTTCTTCCTCAGCTGAAACCACCGTCTCTGTTGCCGTGCCAGCTCCTGAATCCGCCGGGGAACAACAATCGGCGACCGACAATGGCGCCGGCAATAAACAGCCGAAAACAGTCAACAGGGGCGAAGCTGATGCCAAGATGGCGCGGCGGATGCGGCAAAGAGGGGATATTCGTGCGGCGAAGATGATGAGGTTGAAGCATCTTTGGCTGAACTGCGATAAGCGAATCGTCGGAGCGATTCCCGGTGTGTATGTTGGCGACGTGTTCCTCTTTCGGATGGAATTGTGTGTCCTTGGATTGCACGGTCAGATCCAAGCTGGCATTGATTACCTGGCAGCTTCCATGAGCCCCAACAATGAACCAATTGCAACGAGTGTCATTGTCTCCGGTGGCTACGAGGATGATATGGACGAAGGAGATGTTATAATCTACACTGGACAAGGCGGGCAGGCCACGAATTCCGTGAGGCAAGCCACACACCAGAAGTTGGAGAGTGGGAACCTGGCATTGGAGAGGAGTATGTATCATAATATTGAGGTTAGAGTGATTAGAGGGATGAAGTATGAGGGAGCCGCTGCAAAATCCGGTAAGATTTATGTCTATGATGGTTTATATAGGATTTCTGAGTGCTGGTTTGATGTTGGAAAGTCCGGTTTTGGTGTTTATAAGTATAAGCTTGTTAGGATTGAATGGCAGCCTAAGATGGGTAGTGCTATTCTTAAGGAAGCTAGGAGCATTAGGAAAAGTGGAGTGGATTTTCAACCAATGTATTGTCTTTCTGTTGATATTTCGAATAAGAAGGAGAAGGTTGCGGTTCGGCTCTTTAATGATATTGATGATAGTAAGGAGCCGCTTTGTTTTGATTATCTTCTGACAACTATTTTCCCTCCATTTGTGTTTCATCAGAGCGGGACAGCTACTGGGTGTGATTGTATTGGCGGTTGTATGGATGGATGCTTTTGCAGTATGAAGAATGGAGGCGAGTTTCCTTATAATCAGCAGGCGATCCTTGTGAGGGGGAAGCCTTTGATTTTTGAGTGTGGCCCTTTTTGCAGTTGTCCACCTCAATGTAGGAACCGTGTGTCGCAGAATGGGGTGAAGAACAAGTTGGAAGTTTTTAGGTCGAAGCAGACAGGTTGGGGAGTAAGGTCCTTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAGTATTCAGGTGTTGTTTTGACTAGGGAGCAAGCACAGCTTTTGACGATGAATGGTGACTCGTTGATATATCCTAATCGGTTTTCTGAAAGGTGGGCAGAATGGGGTGATTTGTCTCAGGTAAACTTGGACTATGTGCGTCCATCTTATCCGTCAATTCCTCCTCTGGATTTTTCTCTGGATGTGTCAACAGTCCGAAACGTTGCTTGCTATATGAGCCATAGTTCAAGTCCAAATGTTATGGTTCAATTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACCTTATGCTGTTTGCAATGGAGAATATCCCTCCACTGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTGGACAGGCAAGCTCTCCATATGTAATGGGTGA 2364 0.4843 MDSLLSLQTPSNNPHPHSPPGLTPTPLRLQPTQMPLLVPKPEPLDDFFFSNNSQQRPHWFPHQQQPQPNNNEFELHAPPFASSSPEEQEDSELYNHFFRVSQLFRTAFSDTLFQKDAVPEPVTPQLQSQSHSNFQDSLSYASSSQPEPEAEVEATPEADSRALVPVPPSSSLVVAAPSKRVSKKKLLVRVSKLRLHEQLHFREVVRRTRMIYDSIRVLCTIEEEKRVQEEKRAAEEKRTAAVADVVTIAADEPFAASESTIECSSSAETTVSVAVPAPESAGEQQSATDNGAGNKQPKTVNRGEADAKMARRMRQRGDIRAAKMMRLKHLWLNCDKRIVGAIPGVYVGDVFLFRMELCVLGLHGQIQAGIDYLAASMSPNNEPIATSVIVSGGYEDDMDEGDVIIYTGQGGQATNSVRQATHQKLESGNLALERSMYHNIEVRVIRGMKYEGAAAKSGKIYVYDGLYRISECWFDVGKSGFGVYKYKLVRIEWQPKMGSAILKEARSIRKSGVDFQPMYCLSVDISNKKEKVAVRLFNDIDDSKEPLCFDYLLTTIFPPFVFHQSGTATGCDCIGGCMDGCFCSMKNGGEFPYNQQAILVRGKPLIFECGPFCSCPPQCRNRVSQNGVKNKLEVFRSKQTGWGVRSLDLIHAGAFICEYSGVVLTREQAQLLTMNGDSLIYPNRFSERWAEWGDLSQVNLDYVRPSYPSIPPLDFSLDVSTVRNVACYMSHSSSPNVMVQFVLYDHNNLMFPHLMLFAMENIPPLRELSLDYGVADEWTGKLSICNG* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4537 787 Gene3D - 337 498 IPR036987 -
Amo19g4537 787 MobiDBLite consensus disorder prediction 47 72 - -
Amo19g4537 787 ProSiteProfiles YDG domain profile. 340 490 IPR003105 -
Amo19g4537 787 SMART preset_2 522 614 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo19g4537 787 ProSiteProfiles Pre-SET domain profile. 569 627 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo19g4537 787 Pfam Pre-SET motif 525 622 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo19g4537 787 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 39 241 - -
Amo19g4537 787 Pfam SET domain 641 773 IPR001214 GO:0005515
Amo19g4537 787 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 118 787 IPR025794 GO:0016571
Amo19g4537 787 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 307 783 - -
Amo19g4537 787 SUPERFAMILY SET domain 515 785 IPR046341 -
Amo19g4537 787 MobiDBLite consensus disorder prediction 278 310 - -
Amo19g4537 787 MobiDBLite consensus disorder prediction 278 297 - -
Amo19g4537 787 MobiDBLite consensus disorder prediction 1 89 - -
Amo19g4537 787 SMART set_7 630 779 IPR001214 GO:0005515
Amo19g4537 787 Pfam SAD/SRA domain 339 492 IPR003105 -
Amo19g4537 787 SMART G9a_1 335 494 IPR003105 -
Amo19g4537 787 MobiDBLite consensus disorder prediction 121 165 - -
Amo19g4537 787 ProSiteProfiles SET domain profile. 630 773 IPR001214 GO:0005515
Amo19g4537 787 SUPERFAMILY PUA domain-like 322 504 IPR015947 -
Amo19g4537 787 MobiDBLite consensus disorder prediction 121 149 - -
Amo19g4537 787 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 307 783 - -
Amo19g4537 787 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 39 241 - -
Amo19g4537 787 Gene3D SET domain 499 786 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4537 Amo-Chr19 162682247 162684610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4537 306 775 Su(var)3-9 homologs AT5G04940 41.597 1.13e-103 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo19g4537 SAD_SRA 1.6e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4537 K11420 - aip:107626851 1344.33