Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4525 ATGGGAGCAACAACAGTGGAAAGAACTCGCAGCAGAAAGAAGGCATCATCCAGAGGACACCATAAATTTGTTGGTGTTCGTCAGAGGCCATCAGGGAGATGGGTGGCTGAGATCAAAGATTCTTTGCAGAAGGTTAGACTCTGGCTCGGAACCTTCGACACGGCTGAAGACGCCGCTAGAGCTTATGACACTGCTGCCAGAGCCTTAAGAGGTGTCAATGCAAGGACAAACTTTGACTTGCCTGCTGCAGAGTCTGGTGGCGCCGCTGCTTCGAAGCGCGGCGCCGGTTCCGGCTTCATTCCTGATTGCACTGAGCCTTTTTCATTTGAGGATTCCAGTGAGGCTGTGGCTGACGGAGATGGCCTTCTTGGTGCACTCAAGGCTAAACTGTTTGATGTAAAGGGCGGAGGAGGGAGGTTTCCTCCGCCGGTTGTTCAATCAAGCATGGTTTCAAGGTCAACTCAGAATCAGAATCAGAATCAGAATCAGAATCAGAATCAGAACTGTTCTGTGAAGAATAAAGAGTTGTTTTCTTCATCAGTAGTAATGCTTCCTAATAAGATGAATAATTATAATAATAATGCAAATTGCAGCAGCACTAGTAGTTTGCCATGTTTGATTAGTACTTCATCAAACACTTGTTCTAAGAGTGTGATTATGACCCCTGCTAATGCTAATCATGATGATCATGAAGGAACTTTTAATAGCTCTCATCATCATCATCAACAATTTTGTCAAACCCCATCACCTATGACAACATGGTCAAATAATGAAGTATCATATGATCAATTACCATGGACTCATCATCAAGAGAATGGTTTTCTTGCATCTTCAAGCACAGCTACTCTTACATGGCCTAATCATCTCTCAGGGGTAAATGAGTCAAATACTGTAGATAATATGGGATATAATACAGATTATCATAATCCTGGAACATCAAATAGCAGCAGGAATAATAGTAGTATGCAATTTCCTCTGATTGGTGGAGTAAGCAATGAAGGATTTTGGACAATGGAGCAGCAACAATTTCTGCAATGTGAAGGCTCCAATTGGTTTTCTTCTAATGGATATTGGGATCCTCTTCTCTTTGTGCCCTCTGATCTATAG 1107 0.4264 MGATTVERTRSRKKASSRGHHKFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGVNARTNFDLPAAESGGAAASKRGAGSGFIPDCTEPFSFEDSSEAVADGDGLLGALKAKLFDVKGGGGRFPPPVVQSSMVSRSTQNQNQNQNQNQNQNCSVKNKELFSSSVVMLPNKMNNYNNNANCSSTSSLPCLISTSSNTCSKSVIMTPANANHDDHEGTFNSSHHHHQQFCQTPSPMTTWSNNEVSYDQLPWTHHQENGFLASSSTATLTWPNHLSGVNESNTVDNMGYNTDYHNPGTSNSSRNNSSMQFPLIGGVSNEGFWTMEQQQFLQCEGSNWFSSNGYWDPLLFVPSDL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4525 368 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Amo19g4525 368 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 7 364 - -
Amo19g4525 368 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Amo19g4525 368 MobiDBLite consensus disorder prediction 139 169 - -
Amo19g4525 368 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Amo19g4525 368 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Amo19g4525 368 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Amo19g4525 368 MobiDBLite consensus disorder prediction 1 26 - -
Amo19g4525 368 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Amo19g4525 368 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 364 - -
Amo19g4525 368 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Amo19g4525 368 MobiDBLite consensus disorder prediction 146 169 - -
Amo19g4525 368 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4525 Amo-Chr19 162512544 162513656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4525 10 78 AP2-EREBP Transcription Factor Family AT5G19790 68.571 1.75e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo19g4525 AP2 6.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4525 - - gmx:102661478 312.768