Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4503 ATGCAGCTCCTCAACTCCGATGAACCCGCCTCCGAAACCCGCAGCCATCCCGAGAAACCCCAAGAAGAATCCAGTTCCCCCGCGACCGATTCATCGGACTCTACAACCGACGAAGGCGTGGCCCTCGACGTTTCCGGGAAGAGCCTGGAGTTTTCGGCGGTGGATGAGGAGACCGCGGAGGACTCCGCTGCGGAGAGCTTGTACCTCTACAGGAACGTTTACAGCTTGGTTCCGAAGTGGGTGGGTGGTCTGGCACGGTTGAAGACGCTGAAGTTCTTTGGGAACGAGGTGAACTTGTTCGCTCCGGAGTTCAGGGGCATGACGGCACTGGAGTGCTTGCAAATGAAGATTTCATCGCCTGGGATCGGTGGGTTGCCGCTTCACAAGCTGAATGGGTTGAAGGAGCTCGAGCTCTCCAGAGGGCCACCAAGGCCTTCGGCTTTTCCATTGTTGGCCGAGATTGCTGCCCTTAAGCGATTGACTAAGCTTTCTATTTGTCATTTTTCTATCAGATATCTACCTCCGGAAATTGGATGCTTAAAGAATCTGGAGTATCTTGACCTTTCATTCAATAAATTGAAGACATTGCCGTCAGAGATCAGTTGCTTGAATAGCTTAATAACCATGAAAGTTGCGAATAATAAGCTAGTGGAGCTACCGTCCACAATGACCTCTCTTACAAGGTTGGAGAGTTTGGACCTTTCAAATAATAGGTTGACTTCGTTAGGCTCTATTGAACTTGGTTCCATGTGTAGGCTTCAGCTCTTAAATCTTCAGTACAACAAGCTGCTCAGCGTTTTTCACATTCCTTCATGGATATGCTGTAAACTGGAAGGAAATGATGGAGGTGGGTGTAACGATGATTGTAGCAGTTCTTCTGTTGAAATGGATGTCTACGAAAGCAGTCAACAGGAAAATGATCGAACAATTTCTAATGGTGCGCATAATACCTCATCAAGCACATTAACTAGTACCTCATCTAGCAGTAGATGTTTCTCAGCCCGAAAGTCAGGTAAAAGGTGGAAGCGGCGGTTTTATTTACAGCAAAAAGCTCGTCAAGAGCGCCTGAATAACAGCAGGAAGTGGAAAGTTGTAGATCAAGATCAATTATTGAGCAATAATATTCAAATAATTTCTGAGTCTGGAAACATTGCTGCTGCAAGTTGCAAAGAAACTGTATCAGACCATGTGAATCTGGATGATAATGGGAAAAAAATATTCTCTGAAAAAGAAGTAAATGATAATTTAAGTGGTAATAATAAGGATGAAGTAATATTAGAAAAGCAATTTTCTAGTGACAATTGCCATACTGCTGAATGTAAAGATGAAAGAGATGCATCCTTAAATGGACCTGGTGAACAGGATGAACAATCTTTGGAGATTTTGAAGTGTTTTTCTACAAAGAGGTATTCAGATCGGCATCTTGACAATCCTAAACCATGCAAGTTTAGAAAACCAATTGTTGATGCCTCAATATTGGCTTGCAAGTACAGTAAGTTCTCAATTTGTGGTATTGAAGACCATCTGTCAGATGGGTTTTATGATGCAGGACGTGATCGGCCATTTATGCCTCTTGAGAGTTATGAGCAGAATCAGTGCCTTGATTCTCGTGAGGTCATCCTACTAGACAGGAAAAGGGACGAAGAGTTGGATGCTGTATTGCCCTCTGCTCAGGCACTGGTCACAAATTTGAAAAAGTTAAATGGTTTAAATACACGTGGGATGCATGCCGTAGTTGATAGCTTGCAGACAGCTTCACTGCTTGCACTCTTTGTATCGGACCATTTTGGTGGCAGCGATAGAAGTGCTATGGTAGAAAGAACACGGAAATCTGTGTCAGGTTCAAACTATAATAAGCCTTTTGTTTGTACGTGCTCAGCTGGAAGCAGCACCAGTATGACTTCTTCTAAAAAACCTGCTGTAAACACCATAGAAGATATCACTCTTTCTAGAATCTCTGAACAATGTATCGATTCTATTAAAAAAAGGCGAAGTTCAATCATAGTCCCTATTGGTTCTGTGCAGTATGGTGTATGTAGACATAGAGCTCTGCTTTTGAAGTATTTATGTGATCATATGGTGCCAGCAGTGCCTTGTGAGCTTGTCAGGGGTTACTTGGACTTTTCCCCACATGCATGGAATATCATTCTGATTAAGAGGGGTGATACATGGGTCCGAATGCTGGTTGATGCTTGTCGACCCCATGACATAAGAGAAGAGAAGGATCCTGAATACTTCTGCAGGTACGTACCTCTTAGTCGAGCCACGATCCCCCTTTCTTCTCGTGGAAGTCATGGTCCTGATTGTTTGTTTCCATCTCTCTCTACTTGTGACGAACTTAAGAAAAAAGCTTCCACTACTTTAGTGCAGTGCAAAATTGGGTCAGTTGAGGCTGCAGCAAAGGTACGTACTTTGGACGTGCAGGGAAGTTCAGCAGCCGAAATTAGAAATTTTGATTATAATTGTTTGGGAGAAGTTAGAATTCTAGGTTCGTTAAAACATCCCTGCATAGTGGAAATGTATGGACACGAAATATCGTGCCAATGGACTTTCACAGCTGATGGCAAGCCTCACAATCGCATATTAAGATCTGCAATTTTTATGGAGTATGTTGATGGCGGCTCCTTGAAAAACTATTTGGAAAAGCTATCAGAAGCTGGTGAAAAGCATGTCCCTATGGAGTTGGCGTTGTATATCGCCAGAGATGTCTCCTCTGCCTTGTCAGAGCTGCACTCAAAGCACATAATTCATCGGGACATTAAAAGTGAAAACATCCTGTTTGATTTGGATAGAAAGACTGATGATGGAACTCCCACTGTGAAGTTGTGTGATTTTGACAGTGCAGTGCCACTAAGATCACGTATGCATGCTTGCTGTATTGCACATATGGGAACTCCACCTCCTTCTGTATGTGTTGGAACACCACGGTGGATGGCTCCAGAAGTTATGCGGACTATGTATGAAAAACGCGCTTATGGATTGGAAGCTGATATTTGGTCATTTGGATGTTTACTTTTGGAGATACTGACTCTGCAAATTCCATATTATGGAGTACCTGATTCAGACATCCATGACAGTCTGCAGATGGGTAAGCGGCCACGATTAATAGATGAACTGGAGGCATTGAGTTCAATGAGTGAACCCTCAGTAATTCAATCTGGCGAAGACCTGGAAAAATCAGATGCAGAGGCAGACTTGCTGAAATTCCTTGTTGGGTTGTTTCATAGATGCATGGAAGAAAATCCTGCAGAGCGTCCTACAGCTAAAGAAATCCATGAAATGCTACTTGCACGCACAGGCCGTTTACAAGCACAAGATGATAGGAAGATTTAG 3333 0.4338 MQLLNSDEPASETRSHPEKPQEESSSPATDSSDSTTDEGVALDVSGKSLEFSAVDEETAEDSAAESLYLYRNVYSLVPKWVGGLARLKTLKFFGNEVNLFAPEFRGMTALECLQMKISSPGIGGLPLHKLNGLKELELSRGPPRPSAFPLLAEIAALKRLTKLSICHFSIRYLPPEIGCLKNLEYLDLSFNKLKTLPSEISCLNSLITMKVANNKLVELPSTMTSLTRLESLDLSNNRLTSLGSIELGSMCRLQLLNLQYNKLLSVFHIPSWICCKLEGNDGGGCNDDCSSSSVEMDVYESSQQENDRTISNGAHNTSSSTLTSTSSSSRCFSARKSGKRWKRRFYLQQKARQERLNNSRKWKVVDQDQLLSNNIQIISESGNIAAASCKETVSDHVNLDDNGKKIFSEKEVNDNLSGNNKDEVILEKQFSSDNCHTAECKDERDASLNGPGEQDEQSLEILKCFSTKRYSDRHLDNPKPCKFRKPIVDASILACKYSKFSICGIEDHLSDGFYDAGRDRPFMPLESYEQNQCLDSREVILLDRKRDEELDAVLPSAQALVTNLKKLNGLNTRGMHAVVDSLQTASLLALFVSDHFGGSDRSAMVERTRKSVSGSNYNKPFVCTCSAGSSTSMTSSKKPAVNTIEDITLSRISEQCIDSIKKRRSSIIVPIGSVQYGVCRHRALLLKYLCDHMVPAVPCELVRGYLDFSPHAWNIILIKRGDTWVRMLVDACRPHDIREEKDPEYFCRYVPLSRATIPLSSRGSHGPDCLFPSLSTCDELKKKASTTLVQCKIGSVEAAAKVRTLDVQGSSAAEIRNFDYNCLGEVRILGSLKHPCIVEMYGHEISCQWTFTADGKPHNRILRSAIFMEYVDGGSLKNYLEKLSEAGEKHVPMELALYIARDVSSALSELHSKHIIHRDIKSENILFDLDRKTDDGTPTVKLCDFDSAVPLRSRMHACCIAHMGTPPPSVCVGTPRWMAPEVMRTMYEKRAYGLEADIWSFGCLLLEILTLQIPYYGVPDSDIHDSLQMGKRPRLIDELEALSSMSEPSVIQSGEDLEKSDAEADLLKFLVGLFHRCMEENPAERPTAKEIHEMLLARTGRLQAQDDRKI* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4503 1110 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Amo19g4503 1110 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
Amo19g4503 1110 SMART serkin_6 778 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4503 1110 Pfam Protein kinase domain 819 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4503 1110 MobiDBLite consensus disorder prediction 296 334 - -
Amo19g4503 1110 Pfam Ethylene-responsive protein kinase Le-CTR1 648 730 - -
Amo19g4503 1110 PANTHER BNAC08G43810D PROTEIN 65 1099 - -
Amo19g4503 1110 PRINTS Leucine-rich repeat signature 183 196 - -
Amo19g4503 1110 PRINTS Leucine-rich repeat signature 226 239 - -
Amo19g4503 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 915 927 IPR008271 GO:0004672|GO:0006468
Amo19g4503 1110 SMART LRR_sd22_2 226 247 - -
Amo19g4503 1110 SMART LRR_sd22_2 180 202 - -
Amo19g4503 1110 SMART LRR_typ_2 180 203 IPR003591 -
Amo19g4503 1110 SMART LRR_typ_2 226 249 IPR003591 -
Amo19g4503 1110 SMART LRR_typ_2 250 276 IPR003591 -
Amo19g4503 1110 Gene3D Transferase(Phosphotransferase) domain 1 778 1108 - -
Amo19g4503 1110 MobiDBLite consensus disorder prediction 1 41 - -
Amo19g4503 1110 MobiDBLite consensus disorder prediction 296 335 - -
Amo19g4503 1110 MobiDBLite consensus disorder prediction 24 41 - -
Amo19g4503 1110 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 65 1099 - -
Amo19g4503 1110 SMART LRR_bac_2 203 222 - -
Amo19g4503 1110 SMART LRR_bac_2 180 199 - -
Amo19g4503 1110 SMART LRR_bac_2 226 245 - -
Amo19g4503 1110 Pfam Leucine rich repeat 159 216 IPR001611 GO:0005515
Amo19g4503 1110 ProSiteProfiles Protein kinase domain profile. 774 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4503 1110 Gene3D Ribonuclease Inhibitor 34 291 IPR032675 -
Amo19g4503 1110 SUPERFAMILY L domain-like 66 289 - -
Amo19g4503 1110 SUPERFAMILY Protein kinase-like (PK-like) 818 1095 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4503 Amo-Chr19 162290013 162295578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4503 825 1098 MAP Kinase Kinase Kinase AT1G63700 29.964 3.78e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Amo19g4503 Pkinase 4.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4503 - - gmx:100811118 1617.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4503 19 162290013 162295578 Amo19g4503 19 162290013 162295578 ECH
Amo19g4503 19 162290013 162295578 Amo09g2844 09 107622198 107625468 hybridization