Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4502 ATGCCAGTGAGGCAGATGAAAGAAAGCTCTGAGCAACACATTGTGATTAAACCCCATTCTCAGAACCACATGAATAAGGCACCAAAAGCTGCACAAAATGGAAAAGGACCACCACCACCACCACCATCACAAGAGAACCACCAGCACCACAACAACAACCACCACCACCACCACAACCACCAGTCATCACCTCAACCAAGAAACAAAGGGAGAAGAAGGGGCAGAGGTGGGAGAAAATCTGATCAAGGAGAGATTTTGATGAGACCAAGTTGCAGGCCCTGCACTGCTGGTGCTGCTCCTCCTCCTGTGACAGCAAATGGGATTAATAGTAATAATGTTGAGAATGGCTGCAAGATCAGTGGTGGTGATGGTGGTAACATAACAGACATGGGTTTTCCCACTTCAAGCAAATCCTTGAGCTTTGCTCGCAGGCCTGGCTATGGACAAGTTGGGACAAAATGCATTGTCAAGGCTAATCACTTCTTTGCTGAGCTACCGGACAAGGACTTGAACCAATATGATGTAACAATTAGCCCAGAAGTGAGTTCAAGAGCAGTAAATCGGTCCATAATAGCAGAACTTGTGAGGCTTTACAAAGAGTCTGATTTGGGGATGAGGCTTCCTGCTTATGATGGCAGGAAAAGTCTGTACACTGCTGGCCAGCTTCCCTTTGCCTGGAGAGAATTTAAGATAAAGCTTCTTGATGATAATGATGATGGAGTTAATGGCCCCAAAAGGGAAAGGGAATATAGGGTGGTGATCAAGTTTGTTGCTCGTGCAAACTTGCATCACTTGGGCCAGTTTCTAGCCGGCAAGCGAGCTGATGCACCACAGGAGGCACTTCAGATTCTTGATATTGTACTGAGAGAGCTATCAACTAAGAGGTACTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCTCAACGGCTTGGAGAGGGGTTGGAATCATGGTGTGGATTCTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGACATGGCTTCTGCTGCATTCATTGAGCCTCTTCCAGTAGTAGAATTTGTTGGCCAACTATTAGGGAAAGATGTTCTTTCAAGGCCACTGTTCCCTGTTGATGAGAACTCAACTATGAAGTCAGTGGTTGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATACACTCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAGGCAAACTACTTACCCATGGAGGCCTGTAAAATTGTGGAAGGGCAAAGGTATACAAAAAGATTGAATGAGAAGCAAATTACTGCACTGCTCAAAGTTACTTGCCAGAGACCGCGCGATCGCGAAAATGACATCTTAAGGACGGTGCAACATAATTCTTATAATGAAGATCCTTATGCAAAGGAATTTGGTCTTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAATACCATGAAAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGTCAGTGGAACATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCGTGCATTAACTTTTCGCGGAGCGTGCAAGATAGTGTTGCTCGCACATTTTGTCATGAGCTTGCTCAAATGTGTCAAGTGTCTGGCATGGAATTCAATCCAGAGCCTGTCATTCCCATCTACAATGCCAAGCCAGAGCAGGTAGAGAAAGCTTTAAAGCATGTTTATCATGTGTCGACGAACAAAACTAAAGGGAAAGAGTTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGATCTCTATATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTGACAAAACATGTCTTCAAGATCACCAAACAGTACTTGGCAAATGTATCTCTAAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTAGATGCTGTAAGCTGCAGAATACCGTTGGTTAGTGACATACCAACCATAATATTCGGAGCAGATGTTACTCACCCTGAAAATGGAGAAGACTCTAGCCCTTCAATAGCTGCTGTAGTAGCATCCCAGGACTGGCCTGAAGTGACAAAATATGCTGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAGCTTATACAAGATTTGTACAAAACTTGGCACGATCCTGTTCGTGGCACAGTCAGCGGTGGCATGATCCGAGATTTGTTGGTTTCMTTTAGAAAGGCYACAGGGCAAAAGCCACTAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTCTCCTTTATGAATTAGATGCAATCCGGAAGGCCTGTGCTTCCTTAGAACCAAACTATCAGCCTCCGGTAACTTTCATAGTTGTACAAAAACGACATCATACACGGTTATTCGCTAACAACCACCGGGACAGGAGCAGTACAGATAAGAGTGGGAATATAATGCCTGGGACTGTTGTTGATTCTAAAATATGTCATCCAACAGAATTTGATTTCTATCTATGCAGTCATGCTGGCATCCAGGGTACAAGTAGGCCTGCCCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAATCTTTGACAAACAATCTGTGTTACACATATGCTAGGTGTACTCGATCTGTATCAGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCATTTAGAGCACGTTTCTATATGGAGCCAGATATGCAAGAGAATGACTCTACAGGTGGTGGTAACGGTGGTGGTCGTGGAGGATCGAAGGGAACTCGAGCAGCCGGAGAGTGTGGTGTGAAGCCACTGCCAGCCTTGAAAGAGAATGTGAAGAGAGTAATGTTTTACTGTTGA 2895 0.4373 MPVRQMKESSEQHIVIKPHSQNHMNKAPKAAQNGKGPPPPPPSQENHQHHNNNHHHHHNHQSSPQPRNKGRRRGRGGRKSDQGEILMRPSCRPCTAGAAPPPVTANGINSNNVENGCKISGGDGGNITDMGFPTSSKSLSFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTISPEVSSRAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLLDDNDDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTVQHNSYNEDPYAKEFGLKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCHELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNIMPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENDSTGGGNGGGRGGSKGTRAAGECGVKPLPALKENVKRVMFYC* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4502 964 Pfam Argonaute linker 2 domain 447 493 IPR032472 -
Amo19g4502 964 PANTHER PROTEIN ARGONAUTE 10 68 369 - -
Amo19g4502 964 Pfam Piwi domain 596 915 IPR003165 GO:0003676
Amo19g4502 964 ProSiteProfiles Piwi domain profile. 595 916 IPR003165 GO:0003676
Amo19g4502 964 Gene3D - 485 658 - -
Amo19g4502 964 CDD Piwi_ago-like 465 915 IPR045246 -
Amo19g4502 964 ProSiteProfiles PAZ domain profile. 370 421 IPR003100 GO:0005515
Amo19g4502 964 Pfam N-terminal domain of argonaute 153 288 IPR032474 -
Amo19g4502 964 CDD PAZ_argonaute_like 338 420 - -
Amo19g4502 964 PANTHER PROTEIN ARGONAUTE 10 369 963 - -
Amo19g4502 964 Gene3D - 664 964 IPR036397 GO:0003676
Amo19g4502 964 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 68 369 - -
Amo19g4502 964 Pfam Mid domain of argonaute 504 581 IPR032473 -
Amo19g4502 964 SMART DUF1785_2 297 349 IPR014811 -
Amo19g4502 964 Pfam PAZ domain 370 437 IPR003100 GO:0005515
Amo19g4502 964 MobiDBLite consensus disorder prediction 50 76 - -
Amo19g4502 964 SUPERFAMILY Ribonuclease H-like 587 917 IPR012337 -
Amo19g4502 964 Pfam Argonaute linker 1 domain 298 347 IPR014811 -
Amo19g4502 964 MobiDBLite consensus disorder prediction 920 941 - -
Amo19g4502 964 SMART Piwi_a_2 595 916 IPR003165 GO:0003676
Amo19g4502 964 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 369 963 - -
Amo19g4502 964 MobiDBLite consensus disorder prediction 1 98 - -
Amo19g4502 964 Gene3D paz domain 356 424 - -
Amo19g4502 964 SUPERFAMILY PAZ domain 155 462 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4502 Amo-Chr19 162271187 162276942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4502 1 964 Eukaryotic Initiation Factors Gene Family AT5G43810 77.044 0.0 1556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4502 K11593 - gmx:100816999 1676.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4502 19 162271187 162276942 Amo19g4502 19 162271187 162276942 ECH