Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4498 ATGGAGGATGATGAGCTGCTGCTGTTGTTCCATGGTAGCCGCCGGCAGAGGAAAAGGCCGGTGCTGTTTCCTCCTCTGTTAATGGTGATGCTGCTGTTCCTCTTTTCTCCGTTTGTTCACCCACTCACTGAAGAAGGACAAGCATTGATGTCAATCAAGGCTTCCTTCAACAATATGGCAGATGTTCTGCATGARTGGGACGATGTCCACAACGAAGACTTCTGCTCATGGCGTGGCATCTTCTGTGACAATTCTAGCTTCACCGTGATTTCTCTGAACTTGTCGAGCTTGTTACTGGGCGGGGAAATATCACCAGCCATTGGTGATTTAAGAAACTTGCAATCCCTAGACCTGCAGGGGAACAAATTATCCGGTCAAATACCAGATGAAATTGGGAACTGTGCTGATCTTACCCATCTGGATTTGTCTGACAATCAGCTATATGGTGATATACCTTTCTCCATATCAAAGCTGAAGCAGCTTGAGTTTTTGAATTTGAAGAGGAATCAGTTGACTGGTCCTATCCCCACAACTTTATCCCAAATCCCAAACCTGAAAACCCTCGATCTTGCACAAAACAAGCTCATTGGAGAGATACCTAGACTACTCTATTGGAATGAAGTCTTGCAGTACCTTGGATTGCGAGGGAACATGTTGACTGGAACTTTGTCCCCTGATATCTGTCAATTAACTGGTCTGTGGTACTTTGATGTAAGAGGCAATAACTTGACTGGAACTATACCTGACAGCATTGGGAACTGTACAAGTTTTGAAATCTTGGACATCTCATATAATCAGATTTCTGGAGAGATTCCCTATAATATTGGATTTCTTCAAGTGGCTACATTGTCACTTCAAGGAAATAGACTAACTGGGAAGATTCCAGAAGTAATTGGTTTAATGCAAGCCCTAGCAATTCTGGATTTGAGTGAGAATGAATTAGTAGGCCCTATCCCTCCAATACTAGGCAATTTGTCCTTCACTGGCAAGCTGTATCTTCATGGAAACAAGCTTACTGGTCCAATACCTGCAGAACTTGGCAACATGTCGAAATTGAGCTACTTGCAATTAAATGACAATCAACTGGTGGGTAGAATTCCTAATGAGATTGGAAAACTTGAACACCTTTTTGAATTGAATCTTGCCAACAACCATCTTGTAGGGTCTATTCCGCATAATATAAGCTCTTGTACTGCATTGAATCAGTTTAATGTTCATGGAAATCAGTTAAGCGGCTCCATCCCACTTAGCTTCCGCAGCCTTGAGAGTTTGACCTACCTCAATCTCTCTGCTAACAATTTCAAAGGGAGCATTCCTACCGAGCTGGGACACATCATAAATCTTGATACRCTGGATCTGTCTAGCAATTATTTTTCTGGGCATGTACCAGCATCTGTGGGTTATCTYGAGCACCTTTTGACACTGAACCTGAGTCATAATCAACTTTATGGACCCTTGCCTGGCGAATTTGGCAATCTAAGAAGCATACAAATCATTGATATGTCCTCCAACAATTTYTCGGGTAGCATTCCCCCAGAGTTTGGCCAACTGCAGAACCTTATGTCTCTGATTTTGAATAACAACAACTTGCATGGGAAGATTCCTGATCAGCTTAGTAATTGTTTCAGTCTTACCTCTTTGAACTTATCRTATAATAACTTTTCTGGAGTTATTCCTGCCATGAAGAACTTTTCACGGTTTTCAGCTGAAAGCTTCCTTGGAAATCCTTTATTATGTGGGGATTGGRTAGGATCAATATGTCGTCCTCATATTCCAAAATCCAGAGTGTTTGTATCAAGAATTGCAGTTATATGTCTTGCTCTGGGTTTAATCACATTGTTGGCCATGGTAACTGTTGCTATCCGTAAATCAAGCCAATCGAAGCAATTGGTGAAAGGTTCCGGRAGAATTGGTCAAGGGCCACCGAAACTTGTTATTCTTCATATGGATATGGCTATCCACACCTTAGATGATATAATGAGAAGTACGGAGAATCTCAGTGAGAAATATGCTATAGGGTACGGTGCTTCTAGTACTGTATACAAGTGTGCTTTGAAGAATTCCCGARCAATRGCAGTTAAGCGATTGTACAACCAGCATCCACATAACCTGCAGGAYTTTGAGACKGAACTTGAAACAATTGGCAGCATTAGGCACAGGAATCTTGTCACGTTGCATGGTTATGCACTAACSCCCTATGGGAATCTCCTGTTCTATGATTATATGGCCAATGGCTCTTTGTGGGATCTTCTTCARGGTCCACTGAAGGTGAAACTTGATTGGGAGACACGCTTGAGAATTGCAGTTGGAGCTGCCGAAGGCCTTGCGTATCTCCATCATGACTGCAACCCTCGAATTGTTCACAGGGACATTAAGTCTTCGAACATCCTACTTGATGAGAACTTTGAGGCACACCTTTCMGACTTCGGAACTGCCAAATCCATCTCAAGTGCAAGAACACACACCTCAACRTATGTTCTTGGAACAATAGGCTATATTGACCCTGAATATGCCCGYACATCAAGGCTTAATGAAAAATCAGATGTTTATAGCTTTGGCATTGTTCTACTTGAGTTGCTTACTGGAAAGAAAGCAGTGGATAACGAGTCTAACTTGCATCAACTGATATTGTCCAAGGCAGATAACAACACTGTAATGGAGGCTGTCGATCCTGAGGTTTCCATTACCTGCATTGARTTGGCTCATGTCAAGAAGACCTTTCAGCTTGCACTGCTTTGCACGAAACGAAACCCTTCCGAAAGGCCTACTATGCACGAAGTTGCCAGGGTTCTGGTCTCACTACTCCCAGCCCCTCCAAGCAAGATGCGCTCRGGCCCTGCCAAGAATGRGGACTATGCACAGTTCTTGATTGGGAAGGGACAACAGCAATCAAAAGTGGAAGGGCTTCAACTGCAGCAGGATAACAATTCATCGAATGCTCAATGGTTTGTGCGCTTTGGGGATYCAATTTCCAAGAACACTCTCTAG 2988 0.427 MEDDELLLLFHGSRRQRKRPVLFPPLLMVMLLFLFSPFVHPLTEEGQALMSIKASFNNMADVLHEWDDVHNEDFCSWRGIFCDNSSFTVISLNLSSLLLGGEISPAIGDLRNLQSLDLQGNKLSGQIPDEIGNCADLTHLDLSDNQLYGDIPFSISKLKQLEFLNLKRNQLTGPIPTTLSQIPNLKTLDLAQNKLIGEIPRLLYWNEVLQYLGLRGNMLTGTLSPDICQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELVGPIPPILGNLSFTGKLYLHGNKLTGPIPAELGNMSKLSYLQLNDNQLVGRIPNEIGKLEHLFELNLANNHLVGSIPHNISSCTALNQFNVHGNQLSGSIPLSFRSLESLTYLNLSANNFKGSIPTELGHIINLDTLDLSSNYFSGHVPASVGYLEHLLTLNLSHNQLYGPLPGEFGNLRSIQIIDMSSNNFSGSIPPEFGQLQNLMSLILNNNNLHGKIPDQLSNCFSLTSLNLSYNNFSGVIPAMKNFSRFSAESFLGNPLLCGDWXGSICRPHIPKSRVFVSRIAVICLALGLITLLAMVTVAIRKSSQSKQLVKGSGRIGQGPPKLVILHMDMAIHTLDDIMRSTENLSEKYAIGYGASSTVYKCALKNSRXXAVKRLYNQHPHNLQDFETELETIGSIRHRNLVTLHGYALTPYGNLLFYDYMANGSLWDLLQGPLKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKSISSARTHTSTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKADNNTVMEAVDPEVSITCIELAHVKKTFQLALLCTKRNPSERPTMHEVARVLVSLLPAPPSKMRSGPAKNXDYAQFLIGKGQQQSKVEGLQLQQDNNSSNAQWFVRFGDXISKNTL* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4498 995 Gene3D Ribonuclease Inhibitor 42 207 IPR032675 -
Amo19g4498 995 Pfam Leucine rich repeat N-terminal domain 44 83 IPR013210 -
Amo19g4498 995 Gene3D Ribonuclease Inhibitor 208 282 IPR032675 -
Amo19g4498 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Amo19g4498 995 SUPERFAMILY L domain-like 324 580 - -
Amo19g4498 995 SMART LRR_typ_2 421 445 IPR003591 -
Amo19g4498 995 SMART LRR_typ_2 182 206 IPR003591 -
Amo19g4498 995 SMART LRR_typ_2 110 134 IPR003591 -
Amo19g4498 995 SMART LRR_typ_2 230 254 IPR003591 -
Amo19g4498 995 SMART LRR_typ_2 469 492 IPR003591 -
Amo19g4498 995 SMART LRR_typ_2 373 397 IPR003591 -
Amo19g4498 995 SMART LRR_typ_2 517 541 IPR003591 -
Amo19g4498 995 SMART LRR_typ_2 158 181 IPR003591 -
Amo19g4498 995 SMART LRR_typ_2 493 516 IPR003591 -
Amo19g4498 995 SMART LRR_typ_2 349 372 IPR003591 -
Amo19g4498 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 33 964 - -
Amo19g4498 995 Pfam Leucine rich repeat 447 506 IPR001611 GO:0005515
Amo19g4498 995 Pfam Leucine rich repeat 137 195 IPR001611 GO:0005515
Amo19g4498 995 SMART serkin_6 666 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4498 995 Pfam Leucine Rich repeat 541 556 IPR001611 GO:0005515
Amo19g4498 995 Pfam Leucine Rich repeat 253 270 IPR001611 GO:0005515
Amo19g4498 995 SUPERFAMILY Protein kinase-like (PK-like) 646 931 IPR011009 -
Amo19g4498 995 Gene3D Phosphorylase Kinase; domain 1 640 741 - -
Amo19g4498 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 33 964 - -
Amo19g4498 995 ProSiteProfiles Protein kinase domain profile. 666 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4498 995 Pfam Leucine Rich Repeat 112 134 IPR001611 GO:0005515
Amo19g4498 995 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Amo19g4498 995 Pfam Protein kinase domain 669 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4498 995 Gene3D Ribonuclease Inhibitor 283 590 IPR032675 -
Amo19g4498 995 Gene3D Transferase(Phosphotransferase) domain 1 742 944 - -
Amo19g4498 995 SUPERFAMILY L domain-like 44 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4498 Amo-Chr19 162235842 162242874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4498 112 995 Receptor kinase-like Gene Family AT5G07180 75.706 0.0 1345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Amo19g4498 Pkinase 5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4498 K20718 - gmx:100811653 1657.5