Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4487 ATGCACAAGAAATGTTTCTGTTGTTTCCTATCTGAAGAAGAGCAAAGCAAAGCAAGGAATAAAGGAGAAAAGAATAAGAATAAGGATTATCCATGGGAAATCTACACATCGAAGGAGCTGCTTCGTGCAACAAACAATTTTCACCAAGATCACAAGATCGGAGAAGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCATTGCAGTGAAGCGGTTGAAAACGATGACTGCAAAAGCAGAGATGGAGTTCGCAGTCGAAGTGGAAGTACTTGGAAGGGTTAGGCATAAGAATCTGTTGGGTTTGAGAGGTTTCTATGCTGGAGGAGATGAAAGGTTAATTGTTTATGATTTCATGCCTAATCAAAGCTTGCTCACACATTTGCACGGTCACCTTTCTTCTAATTGTCTCTTAGATTGGCCTAAAAGAATCAACATAGCAATTGGTGCAGCTGAAGGTTTAGCGTATTTGCACCATGAGGCAAATCCTCACATCATACACAGAGACATAAAAGCAAGCAATGTTCTGTTAGACCTTGAATTCCAAGCAAAGGTAGCTGATTTCGGTTTCGCAAAGCTCATACCAGAGGGTGTGAGCCATCTCACAACAAGGGTTAAAGGGACACTCGGATATTTGGCACCGGAATATGCCATGTGGGGTAAAGTGTCGGAGAGTTGTGATGTTTACAGCTTTGGGATTCTTCTTTTGGAGATTGTTAGTGCCAAGAAACCAATTGAGAAGCTACCAGGTGGAGTGAAAAGGGACATTGTTCAATGGGTGACACCTTATTTCCAAAAGGGTGCGTTCAATCACATCGCGGATTCCAAGCTGAAGGGGAAGTTTGATTTGGATCAGTTGAAATCTGTGGTGATGATAGCTCTGAGATGCACCGATGGTAGCCCTGAGAAGAGGCCTAGCATGGCAGAGGTTGTGGATTGGCTTAAGGGTGCAGCTGGCAAGAGAAGAAGAGAGGTTACTCCTTCTCTAAGTTTGGGTAATGGTGATGATGAAGTGGATGACGATGATTACGGAGAGATTACACCATACCAATCCAAGTTGAAAATGGCAAGTACTGACAGTGATAGGCATAAGAGAAGATGA 1107 0.4309 MHKKCFCCFLSEEEQSKARNKGEKNKNKDYPWEIYTSKELLRATNNFHQDHKIGEGGFGSVYWGRTSKGIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDFMPNQSLLTHLHGHLSSNCLLDWPKRINIAIGAAEGLAYLHHEANPHIIHRDIKASNVLLDLEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLPGGVKRDIVQWVTPYFQKGAFNHIADSKLKGKFDLDQLKSVVMIALRCTDGSPEKRPSMAEVVDWLKGAAGKRRREVTPSLSLGNGDDEVDDDDYGEITPYQSKLKMASTDSDRHKRR* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4487 368 SUPERFAMILY Protein kinase-like (PK-like) 29 329 IPR011009 -
Amo19g4487 368 MobiDBLite consensus disorder prediction 322 368 - -
Amo19g4487 368 Pfam Protein kinase domain 47 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4487 368 ProSiteProfiles Protein kinase domain profile. 47 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4487 368 CDD STKc_IRAK 53 318 - -
Amo19g4487 368 Gene3D Phosphorylase Kinase; domain 1 8 120 - -
Amo19g4487 368 Gene3D Transferase(Phosphotransferase) domain 1 121 329 - -
Amo19g4487 368 PANTHER OS01G0253100 PROTEIN 4 332 IPR045271 GO:0004714|GO:0006468
Amo19g4487 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Amo19g4487 368 SMART serkin_6 47 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4487 368 ProSitePatterns Protein kinases ATP-binding region signature. 53 73 IPR017441 GO:0005524
Amo19g4487 368 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4487 Amo-Chr19 161886119 161887625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4487 28 339 Receptor kinase-like Gene Family AT5G45780 42.769 8.86e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Amo19g4487 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4487 - - gmx:100817283 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4487 19 161886119 161887625 Amo19g4487 19 161886119 161887625 ECH
Amo19g4487 19 161886119 161887625 Amo19g4487 19 161886119 161887625 PCT