Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4478 ATGTGTTTGTGGCTCAAAATTAACAGGAATAAGTTTCCAACGACAGTTGAAGAATCTCCACAAAGCAAGCTAGAGAGGATCTGGATCGAGATGGTGAGGGGAAAGACTGAGATGAAGAGAATAGAGAATGAATGTAACCGAAAAGTGACGTTTTCAAAGCGCAGAAATGGTCTTTTAAAGAAAGCTCATGAGTTATCTGTTCTCTGTGATGCACAAGTTGGTGTCATAATATTCTCCCAAAAGGGAACCTTATTTGAGTTCTCATCAACTTCTTCTCACATTTCAAAGATATTGGAACGCTACCAGGAATATACCGGAGTGTTTCCACCCAACAAGTTAAGAGAGGATTATATCCAGAAACTCAAGTTTGACTCCGCAAGCATGGAAGAAAAAATTGAGATCCTTGAACTGTCTAGAAGGAAGATGCTGGGACACTGCTTGAGTTCTTGTTCTTTTGATGAACTCCAACAAATGGAGGACAAGCTCCATACAAGTTTGCAATGTATCCGTCTGAGAAAGACTCAACTATTTAAGGAGCAAATTGAGCAACTACAGAGCAAGATTAATGCCTGGCATATTTTTCAGGAGAGAAACTTGCTCAAAGAAAATGTCCGGTTAAGTGCAATGTGCATGGAAAAACCATTGAAGCACATAGAAGAGGAAGCAACAGAAACAACTCATCACACTTTGGATGTGGAGACTGATCTATTTATTGGGCTTCCAAAGCAGTATGCTGATCATAATCAAATATATACATAG 759 0.3926 MCLWLKINRNKFPTTVEESPQSKLERIWIEMVRGKTEMKRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSSTSSHISKILERYQEYTGVFPPNKLREDYIQKLKFDSASMEEKIEILELSRRKMLGHCLSSCSFDELQQMEDKLHTSLQCIRLRKTQLFKEQIEQLQSKINAWHIFQERNLLKENVRLSAMCMEKPLKHIEEEATETTHHTLDVETDLFIGLPKQYADHNQIYT* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4478 252 Pfam K-box region 119 210 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo19g4478 252 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Amo19g4478 252 PANTHER MADS BOX PROTEIN 31 243 - -
Amo19g4478 252 SUPERFAMILY SRF-like 33 108 IPR036879 GO:0003677|GO:0046983
Amo19g4478 252 ProSiteProfiles K-box domain profile. 118 216 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo19g4478 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Amo19g4478 252 PANTHER MADS-BOX PROTEIN SOC1 31 243 - -
Amo19g4478 252 CDD MADS_MEF2_like 33 106 IPR033896 GO:0000977|GO:0045944
Amo19g4478 252 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Amo19g4478 252 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Amo19g4478 252 Gene3D - 43 107 IPR036879 GO:0003677|GO:0046983
Amo19g4478 252 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Amo19g4478 252 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Amo19g4478 252 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4478 Amo-Chr19 161811577 161815962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4478 31 188 MADS-box Gene Family AT2G45660 57.862 7.98e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo19g4478 K-box 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4478 - - adu:107467111 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4478 19 161811577 161815962 Amo19g4478 19 161811577 161815962 ECH