Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4476 ATGTCTGGAGGTCCATATTGGAAGGTACTAAAAGGAAGGAAAGATGGAAAGGTTTCAAAGGCATCTGATACCAGCAACTTACCTGCACCATTCTTCAATGTCAGCCAACTCATTCAAAGCTTTGCTAAGAGAGGTTTAGGAGTGAAAGACATGGTGACTTTATCTGGTGGCCACACCCTAGGCTTCTCACATTGTTCTTCCTTTGTAGCTCGCCTTCGCAATTTTAGTTCAGTGCATGACATTGATCCACGCATGAACACCGAGTTTGCAGTAGGCCTAAGAAAGCAGTGCCCAAAGCCAAACAACAATGGTGATGCAGGGCAGTTCTTGGACTCAACAGCTTCGGTTTTTGATAATGATTATTTCAGACAACTGTTGGCAGGAAAAGGTGTGTTCTCTTCCGACCAATCACTGGTTGATGATTCCAGGACTAGATGGATTGTTGAAGCATTTGCCAGAGACCAGAGTTTGTTCTTCAAAGAGTTTGCAACTTCGATGCTGAAACTTGGAAATGCAAGAGGTTCTGGAGATGGAGAAGTGCGACTTAAGTGCAGGTTCAAGAACTAA 567 0.4392 MSGGPYWKVLKGRKDGKVSKASDTSNLPAPFFNVSQLIQSFAKRGLGVKDMVTLSGGHTLGFSHCSSFVARLRNFSSVHDIDPRMNTEFAVGLRKQCPKPNNNGDAGQFLDSTASVFDNDYFRQLLAGKGVFSSDQSLVDDSRTRWIVEAFARDQSLFFKEFATSMLKLGNARGSGDGEVRLKCRFKN* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4476 188 Gene3D Peroxidase, domain 2 28 169 - -
Amo19g4476 188 PANTHER PEROXIDASE 25-RELATED 1 186 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 PRINTS Plant peroxidase signature 3 18 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 PRINTS Plant peroxidase signature 164 177 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 PRINTS Plant peroxidase signature 49 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 PRINTS Plant peroxidase signature 108 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 PRINTS Plant peroxidase signature 124 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 PRINTS Haem peroxidase superfamily signature 110 125 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 PRINTS Haem peroxidase superfamily signature 50 65 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 PRINTS Haem peroxidase superfamily signature 3 15 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 ProSiteProfiles Plant heme peroxidase family profile. 1 188 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 Gene3D - 1 188 - -
Amo19g4476 188 ProSitePatterns Peroxidases proximal heme-ligand signature. 50 60 IPR019793 -
Amo19g4476 188 PANTHER PEROXIDASE 66 1 186 - -
Amo19g4476 188 SUPERFAMILY Heme-dependent peroxidases 2 188 IPR010255 GO:0004601|GO:0006979|GO:0020037
Amo19g4476 188 Pfam Peroxidase 2 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4476 Amo-Chr19 161807417 161808814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4476 1 188 Peroxidase AT5G51890 67.196 3.56e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4476 K00430 - gmx:100799516 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4476 19 161807417 161808814 Amo19g4476 19 161807417 161808814 ECH
Amo19g4476 19 161807417 161808814 Amo09g2837 09 107490756 107492191 hybridization
Amo19g4476 19 161807417 161808814 Amo19g4476 19 161807417 161808814 PCT
Amo09g2837 09 107490756 107492191 Amo19g4476 19 161807417 161808814 PCT
Amo19g4476 19 161807417 161808814 Amo09g2837 09 107490756 107492191 PCT