Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4475 ATGGAAGCGAATCATGGCGGTTTCAGCGAAGAACCGAACGACACTCAAAGCGCCGACGTATCACCCTCTGAGAAAACGCCAATAGCGAAAGCGCCGGAACCTAGGTTCCCGGAGCCGGTACCTCCGTCTCCGGTGACGGTTCCTATGAAGGAGGAGCTCGCGGACTCCGAGAAGAGCCTTGAGGAGCGTCTCCAGGTGGCGATTGTTCCCACGCCGGTGGCAAGGAGGCCGTCGAAGGACCGCCACACGAAGGTAGAGGGGCGGGGCCGGAGAATCCGGATGCCGGCGACGTGCGCCGCCAGGATCTTCCAGCTGACACGGGAGTTAGGCCACAAGTCCGACGGGGAAACAATACGGTGGCTGCTGGAACAGGCTGAGCCGGCCATCATCGAGGCCACCGGTACAGGAACGATCCCGGCAATCGCGGTTTCGGTGGGTGGCACACTCAAGATCCCAACGACGTCGACGGCGACGCCACAAGGCGAAGAAGAGGCGTCGAGAAAACGAAGAAGAAGGGCATCGAACAGCGAGTTCATTGATGTGAATGAAGAACAACAATCCTCAGTGTCTTCGGGTCTCGCACCAATCACACAAACCGCATACGGCGCTAGTTCTAGTGGTGGTGGACTCGTTCCAATGTGGACTATTGGTGGCGGTGGTGGTGGTTCTAATGGTCCTTTTTTCATGTTCCCAAATGCTGCTGCTACTTCTTCCGGGGATGGTGTTGCGAACCATCCTCATTATTGGGCTTTTCCAGCGAATGCGGCGCCGTATTTCAACGTTCAAGCTCGGCCTATTTCGGGGTTTGTTGCGGCTGAGCAATTAGGCCATGTGGTAGTGCAGCAGCAGCAGCCGCAGCCGCCGCCGCCGCCGCCTAGTTGTTGTTCTTCTAATGGCTCTGCTAACTCTTGTTCTACTCTGGCTCCTAGTTTGAGCTCTGGAACCAGTGCTACTAATAATGGCTCTACTTCTACTTCTAGTGCTGCCACTCAGATGCTTAGGGATTTCTCTTTGGAGATTTACGACAAGAAAGAGTTGCAATTCTTGGCTTGCTCTTCCTCTTCTTCTGCCGTTGCTGAAGCTAAGTTGGAACAACCACCACCTCAGACTCTCAGTTCTAAGCCTTCAAACTGA 1134 0.552 MEANHGGFSEEPNDTQSADVSPSEKTPIAKAPEPRFPEPVPPSPVTVPMKEELADSEKSLEERLQVAIVPTPVARRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPAIIEATGTGTIPAIAVSVGGTLKIPTTSTATPQGEEEASRKRRRRASNSEFIDVNEEQQSSVSSGLAPITQTAYGASSSGGGLVPMWTIGGGGGGSNGPFFMFPNAAATSSGDGVANHPHYWAFPANAAPYFNVQARPISGFVAAEQLGHVVVQQQQPQPPPPPPSCCSSNGSANSCSTLAPSLSSGTSATNNGSTSTSSAATQMLRDFSLEIYDKKELQFLACSSSSSAVAEAKLEQPPPQTLSSKPSN* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4475 377 Pfam TCP family transcription factor 78 168 IPR017887 -
Amo19g4475 377 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 354 IPR005333 GO:0003700
Amo19g4475 377 MobiDBLite consensus disorder prediction 162 178 - -
Amo19g4475 377 MobiDBLite consensus disorder prediction 9 23 - -
Amo19g4475 377 MobiDBLite consensus disorder prediction 306 328 - -
Amo19g4475 377 MobiDBLite consensus disorder prediction 150 191 - -
Amo19g4475 377 ProSiteProfiles TCP domain profile. 78 132 IPR017887 -
Amo19g4475 377 PANTHER TRANSCRIPTION FACTOR TCP9 19 354 - -
Amo19g4475 377 MobiDBLite consensus disorder prediction 1 60 - -
Amo19g4475 377 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4475 Amo-Chr19 161803204 161805083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4475 72 349 TCP Transcription Factor Family AT5G51910 49.129 1.90e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo19g4475 TCP 4.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4475 - - ahf:112711692 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4475 19 161803204 161805083 Amo19g4475 19 161803204 161805083 ECH