Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4472 ATGGATGTAGATGGGGGCAACAAGCGTGTCTTCCACCGTCTTGCTGGAGCCACGGCGGCCGACACCAGGCACCACCAAAAAAAAGTGTGCTACCATTGGCAAGCTGGAAACTGCAACAGACATCCCTGCCCCTTTCTCCACAGTGCCACCGTCTACGGTAGCACCATGTCTTGCAATAATAATAATGGCCGCCGGAGCCATACTTTTATGAATGGCACTTCCACGTGGGGCCATGGCAGTGGTGGAGGTAATCATAGAGCAGTTAGGAAGGCTGATAAAGTCTGTAATTACTGGGTGCAGGGGAATTGTGGTTATGGTGAGAGGTGTAAGTTCATTCATTCTTGGAGTTGTGGGGATGGTTTCTCTTTGCTGACTCAGCTTGAAGGCCACACCAAGGTTGTGAGTGGAATAGCTCTGCCTTCTGGTTCCGATAAGCTTTATACTGCAAGTATTGATGAGACTCTCAGAGTTTGGGACTGCCAGTCTGGACAGTGTACTGCTGAGATCAATGTTGGTGGCGAAGTAGGGTGCATGATCAATGAAGGACCTTGGATTTTTGTTGGTATACCCAATTGTGTTAGGGCTTGGAACACTCAAACTTGTATGGAACTAAGTCTACAAGGCCCTGTTGGACAAGTATATGCTCTTGTTGTCAACAATGATATTCTCTTTGCTGGTACACAGGATGGGTCTATATTGGCATGGAAGTTTAACGTAGTGGTCAATGTCTTTGAGCCTGCTGCATCGCTTACAGGTCACTCTCGTGGTGTTGTTTCATTAGTAGTTGGACCCAATAGACTTTACTCTGCTTCAATGGACAATACTATAAGAGTGTGGAACCTTGAACATTTACAGTGTCTACAGATATTAACGGATCACACATCTATTGTGATGTCAGTTCTCTGCTGGGACCAGTTCCTTCTATCTTGTTCACTGGACAAAACAGTAAAGGTGTGGGTTACTACAGAAAGTGGAAAGTTAGAAGTAACATACACTCACAAAGAAGAACATGGTGTGGTTGCTCTTTGTGGGGTGCATGATTCACAAGGAAAGCCAATTTTGCTTTGCTCTTGCACTGATAATACTCTACGCCTTTATGAGTTACCTTCATTTCTAGATAGAGGAAAAATATTCACAAAACAAGAGATACGAACAATTAAGATGGGGCCTGGTGGCATATTTTTCACTGGTGATGGATCAGGTCAAGTGAGAGTATGGAATTGGGCAATAGACCCAACCATTTCCATCCAATAA 1254 0.4466 MDVDGGNKRVFHRLAGATAADTRHHQKKVCYHWQAGNCNRHPCPFLHSATVYGSTMSCNNNNGRRSHTFMNGTSTWGHGSGGGNHRAVRKADKVCNYWVQGNCGYGERCKFIHSWSCGDGFSLLTQLEGHTKVVSGIALPSGSDKLYTASIDETLRVWDCQSGQCTAEINVGGEVGCMINEGPWIFVGIPNCVRAWNTQTCMELSLQGPVGQVYALVVNNDILFAGTQDGSILAWKFNVVVNVFEPAASLTGHSRGVVSLVVGPNRLYSASMDNTIRVWNLEHLQCLQILTDHTSIVMSVLCWDQFLLSCSLDKTVKVWVTTESGKLEVTYTHKEEHGVVALCGVHDSQGKPILLCSCTDNTLRLYELPSFLDRGKIFTKQEIRTIKMGPGGIFFTGDGSGQVRVWNWAIDPTISIQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4472 417 PANTHER - 1 413 IPR044715 -
Amo19g4472 417 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
Amo19g4472 417 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Amo19g4472 417 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 413 - -
Amo19g4472 417 SUPERFAMILY CCCH zinc finger 90 114 IPR036855 GO:0046872
Amo19g4472 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 114 IPR000571 GO:0046872
Amo19g4472 417 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Amo19g4472 417 PRINTS G protein beta WD-40 repeat signature 307 321 IPR020472 -
Amo19g4472 417 PRINTS G protein beta WD-40 repeat signature 146 160 IPR020472 -
Amo19g4472 417 SUPERFAMILY WD40 repeat-like 108 407 IPR036322 GO:0005515
Amo19g4472 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 289 IPR001680 GO:0005515
Amo19g4472 417 Pfam WD domain, G-beta repeat 285 319 IPR001680 GO:0005515
Amo19g4472 417 Pfam WD domain, G-beta repeat 123 159 IPR001680 GO:0005515
Amo19g4472 417 Pfam WD domain, G-beta repeat 246 280 IPR001680 GO:0005515
Amo19g4472 417 SMART c3hfinal6 91 115 IPR000571 GO:0046872
Amo19g4472 417 SMART c3hfinal6 25 49 IPR000571 GO:0046872
Amo19g4472 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 168 IPR001680 GO:0005515
Amo19g4472 417 Gene3D - 113 243 IPR015943 GO:0005515
Amo19g4472 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 282 - -
Amo19g4472 417 Gene3D - 22 112 - -
Amo19g4472 417 SMART WD40_4 120 159 IPR001680 GO:0005515
Amo19g4472 417 SMART WD40_4 243 280 IPR001680 GO:0005515
Amo19g4472 417 SMART WD40_4 199 236 IPR001680 GO:0005515
Amo19g4472 417 SMART WD40_4 283 320 IPR001680 GO:0005515
Amo19g4472 417 SMART WD40_4 324 367 IPR001680 GO:0005515
Amo19g4472 417 SMART WD40_4 373 407 IPR001680 GO:0005515
Amo19g4472 417 ProSiteProfiles Zinc finger C3H1-type profile. 29 50 IPR000571 GO:0046872
Amo19g4472 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 159 - -
Amo19g4472 417 Gene3D - 244 413 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4472 Amo-Chr19 161736903 161738904 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo19g4472 WD40 0.023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4472 - - gmx:100792089 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4472 19 161736903 161738904 Amo19g4472 19 161736903 161738904 ECH