Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4471 ATGTTTCCCATCAATCATATTGTCAATAACCAGCTTGCGAGTAGCTCCTCGGAGAACACTGTCTTGTCATCGCCGTTGTCGGAGGGGGAGGTAGTGCTGGCGGCTAGCCACCCCAAGAAGAGAGCGGGGAGGAAAAAGTTCAGGGAGACGCGCCACCCTGTCTACCGCGGCGTGCGGCGGAGGAACTCCGGCAAGTGGGTTTGCGAGGTGAGGGAGCCAAACAAGAAGACGAGGATATGGCTCGGGACGTTCGCCACTGCGGAGATGGCAGCGCGTGCGCACGACGTGGCCGCTATCGCTCTCAGGGGGAGGTCTGCCTGCCTCAACTTCGCAGACTCGGCGTGGCGCCTTCCGGTGCCGGAGACGACAGACGCAAGAGACATCCAGAAGGCTGCAGCGGAAGCTGCCGAGGCATTCCGCCCCGTGACGGAATCGGAGACTGGTGAAGTGAGGCGGGAGGGTGCTGTGGGGGTAAAGGCGGCGTCAGAGACGACCATGGTGGCGGAGGCGGCGGAAGAGCAAGAAGAAGAAGAAGGGGTGCCGGAGATTTGGAGGACCATGGCGTTGATGTCTCCAACGCATTACTGTGCGAGTGAGTATGGCGTTGATGACGTGGAATTTGATGATGCCGAAGTATCCTTGTGGAGTTATTCAATTTAA 660 0.5909 MFPINHIVNNQLASSSSENTVLSSPLSEGEVVLAASHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFATAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPETTDARDIQKAAAEAAEAFRPVTESETGEVRREGAVGVKAASETTMVAEAAEEQEEEEGVPEIWRTMALMSPTHYCASEYGVDDVEFDDAEVSLWSYSI* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4471 219 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Amo19g4471 219 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Amo19g4471 219 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Amo19g4471 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 219 IPR045277 GO:0003700
Amo19g4471 219 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 12 219 - -
Amo19g4471 219 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Amo19g4471 219 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Amo19g4471 219 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Amo19g4471 219 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Amo19g4471 219 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4471 Amo-Chr19 161734005 161735315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4471 24 217 AP2-EREBP Transcription Factor Family AT4G25470 59.113 5.54e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo19g4471 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4471 - K09286 aprc:113872706 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4471 19 161734005 161735315 Amo19g4471 19 161734005 161735315 ECH
Amo19g4471 19 161734005 161735315 Amo19g4471 19 161734005 161735315 PCT