Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4470 ATGGATGATGGTAACAACCCTCTTCCTCCTCCGATACAAATCCCACCAGCCACTACTCCAGCCCCAACCTCATCATCCTCTTCCCCCTCTTCTGCCGTGCGGTACCGGGGAACACGCTGCCGGAGTGGGAAGTGGGTGTCGGAGATAAGGGAGCCACGCAAGACGACGCGCATTTGGCTGGGGACATACCCAACACCTGAGATGGCTGCTGCTGCCTACGATGTTGCTGCTCTTGCCTTGAAGGGTCCCGATGCGCCTCTCAACTTCCCCGATTCCGTACAATCTTACCCTATTCCTGCCTCATTGTCTCCTCCTGATATTCGCGCCGCAGCCGCCGCCGCCGCTCAGGCGAGGCTTCCGAGGCCACCGCAGAACCCTCTAGAAGGTAGTAGTAGCGGTGGTGGTGGTAACGATAACGTTATTGTTGAAGGGTCTTGTTCCAGTTTGAGTACTGAAGAACAAGGAGGGATGATGGTGGCGGAGTACATTGACGAGGATGAGCTTCTGAATATGCCGAGTGTCATCGAAGACATGGCCAGGGGAATGCAGGTTAGCCCTCCAAGGATGCACTCTTTCTCCTCCGATGACTCCCCTGGGAATTCCGATTTAGATACCCTTTGGAGTTTTTGA 630 0.5524 MDDGNNPLPPPIQIPPATTPAPTSSSSSPSSAVRYRGTRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDAPLNFPDSVQSYPIPASLSPPDIRAAAAAAAQARLPRPPQNPLEGSSSGGGGNDNVIVEGSCSSLSTEEQGGMMVAEYIDEDELLNMPSVIEDMARGMQVSPPRMHSFSSDDSPGNSDLDTLWSF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4470 209 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Amo19g4470 209 SMART rav1_2 34 96 IPR001471 GO:0003700|GO:0006355
Amo19g4470 209 MobiDBLite consensus disorder prediction 109 143 - -
Amo19g4470 209 MobiDBLite consensus disorder prediction 187 209 - -
Amo19g4470 209 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Amo19g4470 209 MobiDBLite consensus disorder prediction 1 48 - -
Amo19g4470 209 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Amo19g4470 209 MobiDBLite consensus disorder prediction 19 35 - -
Amo19g4470 209 ProSiteProfiles AP2/ERF domain profile. 34 90 IPR001471 GO:0003700|GO:0006355
Amo19g4470 209 MobiDBLite consensus disorder prediction 183 209 - -
Amo19g4470 209 Pfam AP2 domain 39 82 IPR001471 GO:0003700|GO:0006355
Amo19g4470 209 MobiDBLite consensus disorder prediction 125 143 - -
Amo19g4470 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 26 209 - -
Amo19g4470 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4470 Amo-Chr19 161713893 161715473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4470 35 209 AP2-EREBP Transcription Factor Family AT5G52020 52.151 6.24e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo19g4470 AP2 5.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4470 - - gmx:100813560 220.705