Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4469 ATGAGCCGCCATAGGAACCCAGCACAAACTTGCCCTCCCACTAATCAACTCCCCTATGGCTATGGCTATGTACCATCACCACCAGCAGCCACGCCTCCAACTTGGTCATCATCCCCTTCCCACTCCGGCACCATGCGCTACAGGGGCACGCGTCTCCGAAGTGGGAAGTGGGTGTCGGAGATAAGGTTACCACGTACCACAAAGCGCATTTGGCTGGGGACATACGCAACGCCTGAGATGGCTGCTGCTGCTTACGATGCTGCTACTCTTGCATTGAGGGGCCCCGAAGCCCATCTCAACTTCCCCAATTTCATACTCTCTTACCCTATTCCTGCTTCATTCTCCGATGCTGATATTCGCGCTGCCGCTGCCGTCGCCGCCTCCTTCGTCGATCAGTATAGGACTACCACCGAGGCGCCACCAGCGATTACTACTTCTGCTGCTGCTGATGCCTATTCCTACAACAGTTGTATCGGACAAGGAGAAGGGATGATAGGAGATTATTTTGATGAGGATGAGCTGTTGAATATGCCGAGTGTGATCCAAGACATGGCCAGAGGACTGCAGATTAGCCCCCCAAGGATGCCTTCTTTCTACTCCGATGATTCCTCCGATGACATTTATTCGGACCTGTATACCCTTTGGTAA 648 0.5309 MSRHRNPAQTCPPTNQLPYGYGYVPSPPAATPPTWSSSPSHSGTMRYRGTRLRSGKWVSEIRLPRTTKRIWLGTYATPEMAAAAYDAATLALRGPEAHLNFPNFILSYPIPASFSDADIRAAAAVAASFVDQYRTTTEAPPAITTSAAADAYSYNSCIGQGEGMIGDYFDEDELLNMPSVIQDMARGLQISPPRMPSFYSDDSSDDIYSDLYTLW* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4469 215 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Amo19g4469 215 Pfam AP2 domain 47 94 IPR001471 GO:0003700|GO:0006355
Amo19g4469 215 SMART rav1_2 46 108 IPR001471 GO:0003700|GO:0006355
Amo19g4469 215 ProSiteProfiles AP2/ERF domain profile. 46 102 IPR001471 GO:0003700|GO:0006355
Amo19g4469 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 40 208 - -
Amo19g4469 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 40 208 - -
Amo19g4469 215 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Amo19g4469 215 SUPERFAMILY DNA-binding domain 47 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4469 Amo-Chr19 161685496 161687290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4469 47 215 AP2-EREBP Transcription Factor Family AT5G52020 48.000 7.86e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo19g4469 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4469 - - adu:107483526 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4469 19 161685496 161687290 Amo19g4469 19 161685496 161687290 ECH