Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4458 ATGGGGTTTGAGGGTTCGATTAGCACCAACAGTGGGAACAGTAACAGAGCTGTGTTGAATGATATTTCCCAACCTATTCCCAGTTCATTGCAAAATCCATCTTCCTTCTCTTTCTCAGCTCAGAGAAAAATGGAGGGTCATAGTGATATGGGTCTCATAGGGGAAAATTTTGACACCAGTTTGATTGGGAGGTTGAGAGATGATGAGTATGAGAGCAGGTCGGGAAGCGATAATTTTGAAGGCGCTTCCGGTGATGATCAGGATGCCGGTGATGACCAGCCACGGAGGAAGAAGAGATACCATAGACATACTCCTCACCAAATTCAAGAGCTTGAGACTTTCTTCAAAGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGGATCTTAGTAAGAGGCTTGGCTTGGAGAATAAGCAAGTCAAATTCTGGTTTCAGAATAGGAGAACCCAAATGAAGACCCAATTGGAACGGCATGAGAACATAATGCTTAGACAGGAGAATGAGAAGCTCAGAGCTGAGAATAGTTTGATGAAGGAAGCCATGTCAAACCCAGTGTGTAACAACTGTGGTGGCCCAGCCATTCCTGGCCAAATTTCATTCGAGGAGCACCAGATTCGAATTGAAAATGCTCGACTGAGGGATGAATTGAACCGCATATGTGCCTTGGCAAACAAGTTCCTTGGCAAGCCAATCTCATCACTGACCAATCCCATGGCTCTCCCAACCTCAAATTCTGGTCTAGAACTCGGTATTGGAAGGAATGGGATTGGTGTTTCGAGCCCCTTTGGAGCTCCCTTGCAGATGGGACTTGATTTAGGAGATGGAGTATTAGGCACTCAACCAGCAATATCTGGAATGAAGTCACCATTGGGATTGATGGGAAATGATGTTCAGCTTGAGAGATCTATGGTTGTAGATGTTGCACTGGCTGCCATGGATGAATTGATTAAGATGGCTCAGGCAGATAGCCCTCTTTGGATTAAGGGCTTTGATGGTGAGAGGGAGGTACTGAATCATGAAGAGTATGCAAGGATGTTCAATCCTTGTATTGGTCCCAAACCTGCTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTAATCATCAACAGTTTGGCCCTTGTGGAAACTTTGATGGATGCGAATCGATGGTTAGAGATGTTTCCATCAATGATTGCTAGAGCTGTCACCCTTGATGTTATATCTAATGGCATGGGTGGAACCAGAAATGGTGCTTTGCAACTGATGCATTCGGAGATTCAATTACTTTCACCACTAGTCCCTATTCGTCAAGTGAGGTTCCTCCGGTTCTGTAAGCAGCATGCGGAAGGTGTTTGGGCTGTAGTCGACGTTTCTGTTGAGATTGGTCGCGATGCTGCGAATGCACAGCCATTCATGAGCTGTCGGAGGCTTCCTTCTGGCTGCGTTGTGCACGATATGCCCAATGGTTACTCCAAGGTTACTTGGGTTGAACATTGGCAGTACGATGATAGTGTGGTGCACCAACTGTATCGGCCATTGATCAATTCTGGCTTTGGATTTGGTGCTCATAGATGGATAGCCACCCTCCAGAGGCAATGTGAATGCTTGGCAATCCTCATGTCCTCATCCATCTCAAGCGACGATCACACAGCATTAAGCCAGGCCGGCAGGAGAAGCATGTTGAAGCTGGCACAGCGCATGACCAGTAACTTCTGTTCTGGCGTCTGCGCCTCGTCGGCTCGCAAGTGGGACAGCCTTCACATTGGAACCTTGGATGATGACATGAGAGTAATGACGAGGAAGAATGTGGATGACCCTGGGGAGCCTCCAGGCATTGTCCTCAGTGCCGCCACTTCTGTTTGGGTGCCGGTGTCACGGCAAAGGCTGTTCGAGTTTCTGCGCGACGAACGGCTTAGAAGTGAGTGGGACATTCTGTCCAACGGTGGACCTATGCAGGAGATGGTCCACATTGCCAAAGGCCAAGGACATGGAAATTGTGTTTCTCTCTTACGTGCTAATGGTGTGAATGCGAATGATAGCAGCATGGTGATTCTGCAAGAGACATGGACAGATGCATCGTGCTCGGTGGTAGTATATGCACCGGTGGATGTGCCGTCGTTGAACGTGGTGATGAGCGGTGGTGATTCTGCATATGTTGCACTCTTGCCTTCGGGTTTTGCCATTCTCCCCGATGGTCATTCGTCGTCCGGCTCCAAGGGCGGCAGCAGCGACGACGGAGGGGGAAGCTTGCTGACGGTTGGATTCCAAATCTTGGTGAATAGCCTGCCAACAGCAAAGCTTACAGTGGAGTCGGTGGATACTGTGAATAACTTGATCTCATGCACCATTCACAAGATCAAAGCTGCACTCACACTTTCATAA 2367 0.4804 MGFEGSISTNSGNSNRAVLNDISQPIPSSLQNPSSFSFSAQRKMEGHSDMGLIGENFDTSLIGRLRDDEYESRSGSDNFEGASGDDQDAGDDQPRRKKRYHRHTPHQIQELETFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENEKLRAENSLMKEAMSNPVCNNCGGPAIPGQISFEEHQIRIENARLRDELNRICALANKFLGKPISSLTNPMALPTSNSGLELGIGRNGIGVSSPFGAPLQMGLDLGDGVLGTQPAISGMKSPLGLMGNDVQLERSMVVDVALAAMDELIKMAQADSPLWIKGFDGEREVLNHEEYARMFNPCIGPKPAGYVTEATRETGIVIINSLALVETLMDANRWLEMFPSMIARAVTLDVISNGMGGTRNGALQLMHSEIQLLSPLVPIRQVRFLRFCKQHAEGVWAVVDVSVEIGRDAANAQPFMSCRRLPSGCVVHDMPNGYSKVTWVEHWQYDDSVVHQLYRPLINSGFGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDSLHIGTLDDDMRVMTRKNVDDPGEPPGIVLSAATSVWVPVSRQRLFEFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANGVNANDSSMVILQETWTDASCSVVVYAPVDVPSLNVVMSGGDSAYVALLPSGFAILPDGHSSSGSKGGSSDDGGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIHKIKAALTLS* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4458 788 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Amo19g4458 788 SMART START_1 306 530 IPR002913 GO:0008289
Amo19g4458 788 Gene3D - 84 170 - -
Amo19g4458 788 MobiDBLite consensus disorder prediction 1 42 - -
Amo19g4458 788 SMART HOX_1 95 158 IPR001356 GO:0003677
Amo19g4458 788 MobiDBLite consensus disorder prediction 69 106 - -
Amo19g4458 788 CDD START_ArGLABRA2_like 301 529 - -
Amo19g4458 788 Pfam Homeodomain 97 152 IPR001356 GO:0003677
Amo19g4458 788 Pfam START domain 307 530 IPR002913 GO:0008289
Amo19g4458 788 Coils Coil 148 183 - -
Amo19g4458 788 ProSiteProfiles START domain profile. 297 533 IPR002913 GO:0008289
Amo19g4458 788 SUPERFAMILY Bet v1-like 558 782 - -
Amo19g4458 788 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 39 786 - -
Amo19g4458 788 SUPERFAMILY Bet v1-like 298 530 - -
Amo19g4458 788 CDD homeodomain 96 154 IPR001356 GO:0003677
Amo19g4458 788 MobiDBLite consensus disorder prediction 1 54 - -
Amo19g4458 788 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Amo19g4458 788 SUPERFAMILY Homeodomain-like 83 154 IPR009057 -
Amo19g4458 788 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 39 786 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4458 Amo-Chr19 161556008 161561886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4458 66 785 Homeobox Transcription Factor Family AT3G61150 61.801 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo19g4458 START 1.9e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4458 K09338 - gmx:100785102 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4458 19 161556008 161561886 Amo19g4458 19 161556008 161561886 ECH