Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4457 ATGGCATTTTTATTTGCATGCACAACCACCACAACAACTGCCTACACCATATTCTTCAAGAAACACCATACTATCATTAAAACATCTCTCTCTCCCTCTCTCTCTCACCCATCCATGGCGAGATACTACAACCTCGGACTCTGCTACCTCCTCCTGTTCCACTTGTTCTGCGGTGCCATTGCTGAACAAAACAACCAAAACCCAGAAAAAATTTCACTACTTTCCTTCAAAAATAGCCTCCACAACCCACAACTCCTCCCTTCGTGGCACCCTGCAACTCCGCACTGCGACTGGGTCGGCGTCACTTGCCAACTCGGCCGAGTCAACTCGCTCTCCCTCCCTTCTCGCAATCTTAGGGGCACCCTCTCTTCCTCCCTTTTCTCTCTCACCTCCCTCGCCACCCTCGACCTTGGCGATAACAACCTCTCCGGTGAACTTCCCGGGGAACTTGGCCGCTTGACTCAGCTGGAGACCCTCCGACTCGGCTCCAACTCGTTTGCCGGAAAATTACCTCCTGAGCTGGGACTCCTCACAGAGCTTCGCACCCTCGACTTCTCCGGCAATGCCCTAGCCGGAGAACTTCCGGAGACTATCGGAAACCTGACCCAACTCGAGTTCCTCGACCTCAGTAATAATCTATTCTCAGGTTCACTACCTTTGTCTCTGTTCACAGGACCCGTATCTCTGATTTCCCTTGACATCTCCAACAACTCTTTTTCCGGCGAGGTTCCGCCGGAGATCGGGAACTGGAGGAACATCACCGCACTCTATGTGGGGAACAACAGATTATCTGGGAGGTTACCTAAGGAAGTTGGTGAGCTTTCAAAGCTTGAGATTTTCTATTCACCTTCCTGTTCCATTGAAGGTCCATTACCCAAGGAAATGGCAAAGCTCAAGTCTTTAACAAAACTTGACCTTTCCTACAACCCCTTGAGGTGTTCAATTCCTGAGTTTATTGGGGAACTTGAGAACCTCAAGATTCTTGACCTTGTTTTTGCTCAGCTCAATGGCTCAGTGCCACCTCAGCTTGGAAGATGTAGAAGCCTGAGGTCTGTTATGCTTTCTTTCAACTCACTCTCTGGTTCATTGCCTATGGAGCTCTCTGAGCTTCCAATTGTAACTTTTTCTGCTGAGAAGAATCAGCTTCATGGGCCATTGCCTTCCTGGCTTGGAAACTGGACCAGTGTTAACTCTCTGTTGCTCTCTGCTAATCATTTCTCCGGTGCGATTCCGCCGGAGCTCGGGAACTGCAGTATGATGGAGCATCTCAGTTTGAGCAGCAATTTGTTGAGTGGAGAAATACCTGAGGAGCTATGCAATGCTGCATCACTTTTGGAGATTGATCTCGATGACAATTTCCTATCTGGCTCCATTGAGAAAGTGTTTGTCAAGTGCAAGAACCTCACTCAGTTGGTCCTCATGAACAATCAGATTGTTGGTTTAATACCTGATTACTTTTCCGAGATTCCCTTGATGGTGCTGGACCTTGACTCCAACAATTTCACTGGCAACATTCCTTCCAGCCTCTGGAATTCGTCCACTCTGATGGAATTCTCAGCCGCAAATAACCGTTTGGAGGGTTCTCTTCCTGTTGAGATTGGCAATGCTGTTATACTAGAAAGGCTTGTTCTTAGCAATAATCAAATTTCCGGTACTATACCAAAGGAAATTGGAAGGCTCACTGGCCTTTCTGTTCTTAATCTGAATGGTAACATGCTTGAAGGGAGTATTCCAATTGAGCTCGGTGATTGCATTTCTCTTACCACATTGGATCTTGGAAACAATAGACTCAATGGCTCCATTCCTGAGAAACTGGTGCAGCTGAGTCAACTGCAGTGTTTGGTTCTTTCTCACAATGATCTGTCCGGGCCTATTCCCCATAAGAACTCTTCCTACTTTCGACAACTTACCATACCGGACTTGAGCTTTGTTCAGCACCTTGGTGTGTTTGATTTGTCCCATAATAGATTGTCTGGCACCATACCTGATGAGCTGGGGGGCTGTGTGGTGGTTGTGGATCTATTGATCAGTAACAACCTGCTATCTGGGAGTATTCCAAGATCACTCTCGCGCTTGACTAATCTTACAACTTTGGATTTGTCTGGCAACTTATTGTCCGGTTCCATTCCACCAGAGCTTGGAGATGCCCTTAAGCTGCAGGGTTTATATCTGGGATACAATCAACTCTCAGGTGCAATCCCTGCAAGTTTTGGGAAATTGAGTAGTTTGGTGAAGCTGAATTTGACAGCGAATAAGCTGTCTGGTCCAATTCAAATTAGTTTTCGAAACATGAAAGAGTTGACACACTTGGACTTGAGCTCCAATGAGCTCAGCGGCAAGATTCCGTCCTCACTGTCAGCAGTGCAAAGCCTTGTTGGGGTTTATATCCAGAGGAATCAGCTTTCTGGCCAAGTAGGGGAGCTCTTCTCAAACTCAATGACTTGGAGGATTGAGATTATGAATTTGAGTGAGAACTGGTTCAATGGGAACTTGCCACGATCTTTGGGAAATCTTTCGTACATGACAAATTTGGATCTTCACAGAAATTTGTTGACTGGAGAGATTCCTCCGGACCTCGGAAATCTGATGCAATTGGAGTACTTTGATGTTTCAAGTAATAAGCTATCAGGAAGGATTCCAGAGAAGCTATGCAGCCTAGCTAATCTGAATTTCCTAGATTTGTCTCAAAACAGATTGGAAGGGCCAATACCAAGAAGTGGCATTTGCCAAAACTTATCAAGAGCTAGATTTGTGGGGAACAAAGATCTTTGTGGGAAAATGCTTGGTATTAATTGTCAGATCAAAAGCATTTGCAGGTCGGCTTTTTGCGACGCATGGAGGCTAGCTGCAATTGCCATTACAGTCATACTGATAACTCTGAGCATTGGTTTTGTTCTATATAAATGGTTTAGCAGGAGGCAAAGTGATCCTGAGGAACTTGAGGAGCGCAAACTAAACAGCTATGTGGATCAAAATCTTTATTTCCTGAGCAGTAGCAGATCAAAAGAACCTCTGAGTATCAATGTGGCAATGTTTGAGCAACCTCTTCTGAAATTAACCTTGGCTGATATCCTCGATGCTACTGACAACTTCAGCAAGGCAAACATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTGCCTAATGGAAACACAGTTGCTGTGAAGAAGCTCAGCGAAGCTAAAACGCAGGGTCATCGCGAGTTCATTGCCGAGATGGAAACCTTGGGCAAGGTGAAGCATCAAAACCTTGTTGCATTGCTGGGATATTGCTCAATGGAGGAGGAGAAAGTCCTTGTTTACGAGTACATGGTAAATGGGAGCTTAGATTTGTGGCTAAGAAACAGGACCGGAGCCCTTGAAATCCTGGATTGGAAGAAACGTTACAAGATTGCAACCGGCGCAGCTCGAGGGCTAGCTTTCCTTCATCATGGTTTCATACCCCACATCATCCACAGGGATGTTAAAGCAAGCAACATTCTTCTGAATGAGGAATTTGAGCCAAAAGTGGCAGACTTTGGACTTGCAAGATTGATCAGTGCTTGTGAGACTCACATCACCACTGACATAGCCGGAACATTTGGTTACATCCCTCCTGAGTATGGACAGAGTGGGAGATCCACAACAAGAGGAGACGTGTACAGTTTTGGTGTCATTTTGCTCGAATTGGTGACCGGAAAAGAGCCAACCGGACCTGATTTCAAAGAGATTGAAGGTGGGAATTTAGTTGGATGGGTTAGTCAGAAGATCAAGAAGGGTGAGGCTTCTGATGTTCTTGATCCAACAGTTCTTGATGCTGATTCAAAGGCAACGATGCTTCAGATGCTGCAGATTGCTTGTGTATGCCTCTCAGATAACCCTGTGAACCGCCCTACAATGCTTCAAGTGCACAAGTTCCTCAAGGGATTAGGGGATAATAGTTGA 3933 0.4582 MAFLFACTTTTTTAYTIFFKKHHTIIKTSLSPSLSHPSMARYYNLGLCYLLLFHLFCGAIAEQNNQNPEKISLLSFKNSLHNPQLLPSWHPATPHCDWVGVTCQLGRVNSLSLPSRNLRGTLSSSLFSLTSLATLDLGDNNLSGELPGELGRLTQLETLRLGSNSFAGKLPPELGLLTELRTLDFSGNALAGELPETIGNLTQLEFLDLSNNLFSGSLPLSLFTGPVSLISLDISNNSFSGEVPPEIGNWRNITALYVGNNRLSGRLPKEVGELSKLEIFYSPSCSIEGPLPKEMAKLKSLTKLDLSYNPLRCSIPEFIGELENLKILDLVFAQLNGSVPPQLGRCRSLRSVMLSFNSLSGSLPMELSELPIVTFSAEKNQLHGPLPSWLGNWTSVNSLLLSANHFSGAIPPELGNCSMMEHLSLSSNLLSGEIPEELCNAASLLEIDLDDNFLSGSIEKVFVKCKNLTQLVLMNNQIVGLIPDYFSEIPLMVLDLDSNNFTGNIPSSLWNSSTLMEFSAANNRLEGSLPVEIGNAVILERLVLSNNQISGTIPKEIGRLTGLSVLNLNGNMLEGSIPIELGDCISLTTLDLGNNRLNGSIPEKLVQLSQLQCLVLSHNDLSGPIPHKNSSYFRQLTIPDLSFVQHLGVFDLSHNRLSGTIPDELGGCVVVVDLLISNNLLSGSIPRSLSRLTNLTTLDLSGNLLSGSIPPELGDALKLQGLYLGYNQLSGAIPASFGKLSSLVKLNLTANKLSGPIQISFRNMKELTHLDLSSNELSGKIPSSLSAVQSLVGVYIQRNQLSGQVGELFSNSMTWRIEIMNLSENWFNGNLPRSLGNLSYMTNLDLHRNLLTGEIPPDLGNLMQLEYFDVSSNKLSGRIPEKLCSLANLNFLDLSQNRLEGPIPRSGICQNLSRARFVGNKDLCGKMLGINCQIKSICRSAFCDAWRLAAIAITVILITLSIGFVLYKWFSRRQSDPEELEERKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLADILDATDNFSKANIIGDGGFGTVYKATLPNGNTVAVKKLSEAKTQGHREFIAEMETLGKVKHQNLVALLGYCSMEEEKVLVYEYMVNGSLDLWLRNRTGALEILDWKKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEEFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVSQKIKKGEASDVLDPTVLDADSKATMLQMLQIACVCLSDNPVNRPTMLQVHKFLKGLGDNS* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4457 1310 SUPERFAMILY L domain-like 633 925 - -
Amo19g4457 1310 Gene3D Phosphorylase Kinase; domain 1 993 1106 - -
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 700 825 - -
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 151 391 - -
Amo19g4457 1310 SMART serkin_6 1031 1303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4457 1310 ProSiteProfiles Leucine-rich repeat profile. 300 322 IPR001611 GO:0005515
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 376 714 - -
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 818 1306 - -
Amo19g4457 1310 SMART LRR_typ_2 644 668 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 560 584 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 129 153 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 177 200 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 585 608 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 886 911 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 838 862 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 298 320 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 201 225 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 322 346 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 764 788 IPR003591 -
Amo19g4457 1310 SMART LRR_typ_2 692 716 IPR003591 -
Amo19g4457 1310 Pfam Leucine rich repeat N-terminal domain 67 103 IPR013210 -
Amo19g4457 1310 Pfam Leucine rich repeat 743 801 IPR001611 GO:0005515
Amo19g4457 1310 SUPERFAMILY L domain-like 375 634 - -
Amo19g4457 1310 Gene3D Ribonuclease Inhibitor 66 224 IPR032675 -
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 700 825 - -
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 151 391 - -
Amo19g4457 1310 ProSitePatterns Protein kinases ATP-binding region signature. 1037 1060 IPR017441 GO:0005524
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 51 161 - -
Amo19g4457 1310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1153 1165 IPR008271 GO:0004672|GO:0006468
Amo19g4457 1310 Gene3D Ribonuclease Inhibitor 373 633 IPR032675 -
Amo19g4457 1310 Gene3D Ribonuclease Inhibitor 634 935 IPR032675 -
Amo19g4457 1310 Gene3D Ribonuclease Inhibitor 225 372 IPR032675 -
Amo19g4457 1310 SMART LRR_sd22_2 129 148 - -
Amo19g4457 1310 SMART LRR_sd22_2 298 324 - -
Amo19g4457 1310 SMART LRR_sd22_2 862 888 - -
Amo19g4457 1310 SMART LRR_sd22_2 177 203 - -
Amo19g4457 1310 SMART LRR_sd22_2 692 707 - -
Amo19g4457 1310 SMART LRR_sd22_2 764 787 - -
Amo19g4457 1310 SUPERFAMILY Protein kinase-like (PK-like) 1012 1303 IPR011009 -
Amo19g4457 1310 ProSiteProfiles Protein kinase domain profile. 1031 1303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4457 1310 SUPERFAMILY L domain-like 90 361 - -
Amo19g4457 1310 Gene3D Transferase(Phosphotransferase) domain 1 1107 1307 - -
Amo19g4457 1310 Pfam Protein tyrosine and serine/threonine kinase 1034 1303 IPR001245 GO:0004672|GO:0006468
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 51 161 - -
Amo19g4457 1310 PRINTS Leucine-rich repeat signature 767 780 - -
Amo19g4457 1310 PRINTS Leucine-rich repeat signature 886 899 - -
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 376 714 - -
Amo19g4457 1310 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 818 1306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4457 Amo-Chr19 161511697 161515720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4457 69 1304 Receptor kinase-like Gene Family AT5G07280 59.984 0.0 1431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Amo19g4457 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4457 - - aip:107618864 2520.35