Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4454 ATGCTTGAATCCAAATTCAAACCTAAACCATTACACTTGCAATTCTTGCTCATGCTCATTCTCATTCTCCATCAGCATGGCAATGGCACAGAGGCACAGTCCCCGCTCCAGCCGATGAAACCGCTTTCCTCCAACGACAACCCCTGGGACCCTTCAACCTTCCTCTTCATCGCCACCATCCTCGGAACCTTCATATTCCTCGCCGCGTTCGTAGCCTTCCTCCGCCGCTGCACAGAGCCATACTTTACTCAACAACAGAGCAATATCACACACTTGCCCTGTTCCTGCTGCAACGGCGGCATCAGCCCCGACATCCTCGAAACCTTCCCCATCGTGTTCTATTCCAGCATCAAGGACCTCAGAATCCGCAAAGAAGCTCCGCTAGAGTGTGCCGTCTGCCTCACCGAGTTCACCGGCAACGACACTCTTCGGTTGCTTCCACACTGCAACCACGTGTTCCACCCTCCCTGCATCGACGCCTGGCTCTCTTCCCACGTCACCTGCCCCGTTTGCCGCGCCAATCTCAACCAATATCCCTCCCAAGTCGCCATTTCGGTGATAACACAATTGAGCGGCGAGGGAGAAGAAGAACACGAAGAAGACGGTTCTGGAAACAGAGCAGAACAGAGCGTGGGTGGCGAGAGCATAATTGAGGGGAGCCCGTTGGCGCGTGACGCGAGTGAGGGACAGCGGAACAACGAAGAAGATAAAGGGATGCCGGAAAGAGCGGCAAAAGGGAAGCTTGGTGGGAAGGGGAGGGTTCTGAAGAGGTCGAATACGACGGGGCACTCGGTGGTGGAGGCAGGAGAGTGTATGGAGAGGTATACGCTGAGGTTGCCGGAGGATGTGAGGAGGTACATTATGGTGAACCATGGGGTGATGATGACGCAGCGTTCGGCGAGCTACAACGCGGCGGAGTGTTCGAAGAAAGGATTGTGTTGGAGTGACACGGAAGGAGGTAGCAGCAGAGGTAAGAAGGGTCAGAGCTCTGTTAGAGGGAAGGGAAGAGTATGGAAGAATAATGGAGGGCAGTGA 1035 0.5478 MLESKFKPKPLHLQFLLMLILILHQHGNGTEAQSPLQPMKPLSSNDNPWDPSTFLFIATILGTFIFLAAFVAFLRRCTEPYFTQQQSNITHLPCSCCNGGISPDILETFPIVFYSSIKDLRIRKEAPLECAVCLTEFTGNDTLRLLPHCNHVFHPPCIDAWLSSHVTCPVCRANLNQYPSQVAISVITQLSGEGEEEHEEDGSGNRAEQSVGGESIIEGSPLARDASEGQRNNEEDKGMPERAAKGKLGGKGRVLKRSNTTGHSVVEAGECMERYTLRLPEDVRRYIMVNHGVMMTQRSASYNAAECSKKGLCWSDTEGGSSRGKKGQSSVRGKGRVWKNNGGQ* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4454 344 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 306 - -
Amo19g4454 344 PANTHER RING FINGER DOMAIN-CONTAINING 13 306 - -
Amo19g4454 344 MobiDBLite consensus disorder prediction 228 248 - -
Amo19g4454 344 MobiDBLite consensus disorder prediction 191 261 - -
Amo19g4454 344 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Amo19g4454 344 Pfam Ring finger domain 129 172 IPR001841 -
Amo19g4454 344 SMART ring_2 130 171 IPR001841 -
Amo19g4454 344 SUPERFAMILY RING/U-box 129 181 - -
Amo19g4454 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 180 IPR013083 -
Amo19g4454 344 CDD RING-H2_PA-TM-RING 129 172 - -
Amo19g4454 344 MobiDBLite consensus disorder prediction 315 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4454 Amo-Chr19 161494751 161496019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4454 12 288 Rapid Response to Elicitors AT3G05200 33.803 1.63e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4454 K10664 - gmx:100782532 216.083