Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4450 ATGAAAGAATTTTGGCATAGCATTAAGGACCATTCTGAGTACCAAAGTATAATGCCAAATAAGTTAAGCAACAGCTTGAATGACATTAATAAAAGATCAAAGAAGGAATCATGCATTGAGAAATTGGAGAAACACATTGTTCAGAATCCTTCGGACAGGGTTGGCAACTCAATGGCTCAATTTGAAGACCTCCCAGAMGAAGATCCGGAAGAGGAGGAATTGTGTGAGGAGCTAGAGGAAGATCCAGAGGAGGAATCRGCTKMGGAAGTAGAGGATGATCCACACRAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAGGAATTAGTTGAGGAAGTGGAGGAAGATCCAGAGGAAGAATCAGCTGAGGAACTGGAGGAAGATGTACAGGAGGAATCAGCCGAGGAACTGGAGGAAGATCCAGAGGAGGAATCAGGTGAAGAAGTAGAGGAAGATGAAGATCCCGAGGAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAGGAATCAACTGAGGAACTAGAGGAAGATCCTGAAGAGGATCCAGTAGTAAACATCAAGTGGGAGGGTGCATCATGTAATGAAGTTCCATTATTATCCCAGGCATCGTATCAATCACAGAAGAAATGCAAGCAGGAGGGAACGCAAAGCCAAAATTTAGAGCCAGAAGCTTCTCGACTGGAACTCAGTAGTGACAAGTCGATTTCTGTGGCAACTACCGATAAAGTTGGTTCCAAAGAAGAAGTTTCAGGAAGGTCGGCAAAACAAAGGCGTAGTAGATGGGAACCACAACCTCGTGGAGATGGAACGAATGATGATCTGACTTGCAAAAGGAGGAAAACCAGGTGGTCTAGTGAAGAAACTCAAATGAAAATGCTGGGTCCACTTCAGCTACCTAACTTAAATATCATATCTAAGTTGATGACATTAAACCCGGATTTTAACCCTCCTCCTGAATACAAGCCCCCAAAGCTCTTAAAAAAGCTTTACATACCAGTGAAAGAATATCCAGAGTACAATTTCATTGGACTTATTATTGGTCCTCGTGGAAACACACAGAAGAAGATGGAAAAAGAATCTGGGGCTACGATTCTTCTAAGAGGTAAAGGCTCCTCAAAAGCAACTAGCAAATGTGACTCTGAGGAAGAAGATTTACATGTTTTAATAGAAGCTGACAACCAAAAATCACTGGATGCAGCAGTTGGCATGGTTGAAAAACTGCTAATTCCAGTTGAAGAAGGACAAAATGAGCACAAGCGCGAACAGTTAAAGGAGCTGGCTCAACTGAAAGCAACACGGAGAGATGAAAATGTGTGCAGTGTGTGTGGTGATAAGGGACACAGACATTATGCATGCCCTAACCTTAGTTCAACTTTTAATTTCGATTTATTTGACACTGGTTGTAGCAGCAGCCTTTCAATCCCAACTTATCCTGCTACTGCATTGTTTCCACCAAACAGTAACTTTCCATGCGGATCTGGAACAAGTCTTAATTCAGTGCAGAATAGACAAATAAGGCCTGGAAAGGAAATAAACGACAAAAACCTTTATGTTGGTTATTTGCCGCCGTCAATTGACAAGAATAGATTGATTGAGCTGTTCTCCCCATTTGGTAAGATCACTGAAGCTGATGTTATTAAGGATCGAACCACTGGCATCAGTAAAGGTTATGGCTTTGTCAAATATGAAGATTCCCAGGATGCAGCTTTAGCTATAATGCATCTAAATGGTTTCAGAATTGATGGAAAGTTTTTGAAAGTGAGGATAGCCGGACTGCAGGCAAATAATGAAACCCCAAGTCTAAACCTTATTCCTCAGATCCCATTGCCTGCAACTGTCTCCACAAATGTCATTCACCAAACGAATCTTTCTGATCCATTACATTTCATGCTGCCAGAATACCAATCTTCATTTCATGACAGCAGTAGCACAAATATGTTTCCATGTAATATCAACTCAGAGGATGGTGATCCTCTGAAGATCAAAGTTTGTTCTCATCAAAAGATTCAACCGAACATTTTCCTGGTGATCCAGGCAATCTTGTATAATATTTAA 2061 0.4163 MKEFWHSIKDHSEYQSIMPNKLSNSLNDINKRSKKESCIEKLEKHIVQNPSDRVGNSMAQFEDLPXEDPEEEELCEELEEDPEEESAXEVEDDPHXESAEELEEDPEEELVEEVEEDPEEESAEELEEDVQEESAEELEEDPEEESGEEVEEDEDPEEESAEELEEDPEEESTEELEEDPEEDPVVNIKWEGASCNEVPLLSQASYQSQKKCKQEGTQSQNLEPEASRLELSSDKSISVATTDKVGSKEEVSGRSAKQRRSRWEPQPRGDGTNDDLTCKRRKTRWSSEETQMKMLGPLQLPNLNIISKLMTLNPDFNPPPEYKPPKLLKKLYIPVKEYPEYNFIGLIIGPRGNTQKKMEKESGATILLRGKGSSKATSKCDSEEEDLHVLIEADNQKSLDAAVGMVEKLLIPVEEGQNEHKREQLKELAQLKATRRDENVCSVCGDKGHRHYACPNLSSTFNFDLFDTGCSSSLSIPTYPATALFPPNSNFPCGSGTSLNSVQNRQIRPGKEINDKNLYVGYLPPSIDKNRLIELFSPFGKITEADVIKDRTTGISKGYGFVKYEDSQDAALAIMHLNGFRIDGKFLKVRIAGLQANNETPSLNLIPQIPLPATVSTNVIHQTNLSDPLHFMLPEYQSSFHDSSSTNMFPCNINSEDGDPLKIKVCSHQKIQPNIFLVIQAILYNI* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4450 686 Gene3D - 495 600 IPR012677 -
Amo19g4450 686 SMART rrm1_1 517 590 IPR000504 GO:0003723
Amo19g4450 686 MobiDBLite consensus disorder prediction 49 277 - -
Amo19g4450 686 PANTHER RNA-BINDING PROTEIN RELATED 305 645 IPR045071 -
Amo19g4450 686 PANTHER RNA-BINDING PROTEIN RELATED 172 303 IPR045071 -
Amo19g4450 686 MobiDBLite consensus disorder prediction 64 184 - -
Amo19g4450 686 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 327 444 IPR036612 GO:0003723
Amo19g4450 686 CDD SF1_like-KH 329 436 - -
Amo19g4450 686 ProSiteProfiles Type-1 KH domain profile. 342 406 - -
Amo19g4450 686 Gene3D K Homology domain, type 1 280 442 IPR036612 GO:0003723
Amo19g4450 686 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 518 588 IPR000504 GO:0003723
Amo19g4450 686 Coils Coil 120 140 - -
Amo19g4450 686 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 305 645 - -
Amo19g4450 686 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 172 303 - -
Amo19g4450 686 MobiDBLite consensus disorder prediction 198 245 - -
Amo19g4450 686 SMART kh_6 327 411 IPR004087 GO:0003676
Amo19g4450 686 SUPERFAMILY RNA-binding domain, RBD 506 592 IPR035979 GO:0003676
Amo19g4450 686 MobiDBLite consensus disorder prediction 247 277 - -
Amo19g4450 686 Pfam KH domain 342 407 IPR004088 GO:0003723
Amo19g4450 686 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 516 594 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4450 Amo-Chr19 161475989 161479121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4450 440 592 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 2.12e-14 73.2