Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4448 ATGCTAGGCAACAAGTGGTCTCAGATAGCACAAAATTTGCCGGGAAGAACTGACAATGAGATAAAGAACTATTGGCATTCATATTTGAAAAAGAGAGTGATGTCCAATGCTAAGGAAATGGAATCTAATGAACAAGTTCAGTATGCTACCTCAAGCTCAGAAACCATGGATTCTTCTTCACATGCTGTCCAGAATCTTGCAACACAAGGCAAACAAAATACCTATAGCTTCACCAATGAGGCTTGTCAAAGCTCCCCCATACCAAAACTTCTATTTGCTGAGTGGCTTACACTTGATCATGTGCAATGTGGTGGCAACTCTGCTAATTCATATGATGAATCTTTGGCTTTGAAGAATGGATTTGACAGTCAAATTTCGTCTTTTCAAGAATCTGCTACAGTACATGACCCTATGTCACAAGGACCCTTTGGAGGAGATTATCATAATAATAGTCTAGCTCATAGTTCAGCCGAAGAGATGTTCAATTCACAGCTTAAGTTTGGAACAACAATGGTGGAAAATGGATTCATCCAATGTATACCTGGGGTTGAATTTAGTGCCAATTTCAACATGAGCAATGATACGATGTATATCTATGATAATAGCATTATTTCCACGGCAGCTCAAAATGGAATGTAA 639 0.3865 MLGNKWSQIAQNLPGRTDNEIKNYWHSYLKKRVMSNAKEMESNEQVQYATSSSETMDSSSHAVQNLATQGKQNTYSFTNEACQSSPIPKLLFAEWLTLDHVQCGGNSANSYDESLALKNGFDSQISSFQESATVHDPMSQGPFGGDYHNNSLAHSSAEEMFNSQLKFGTTMVENGFIQCIPGVEFSANFNMSNDTMYIYDNSIISTAAQNGM* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4448 212 PANTHER MYB DOMAIN PROTEIN 55 73 191 - -
Amo19g4448 212 PANTHER MYB DOMAIN PROTEIN 55 1 71 - -
Amo19g4448 212 Gene3D - 1 59 - -
Amo19g4448 212 Pfam Myb-like DNA-binding domain 2 29 IPR001005 -
Amo19g4448 212 PANTHER MYB TRANSCRIPTION FACTOR 73 191 - -
Amo19g4448 212 PANTHER MYB TRANSCRIPTION FACTOR 1 71 - -
Amo19g4448 212 ProSiteProfiles Myb-like domain profile. 1 29 IPR001005 -
Amo19g4448 212 CDD SANT 4 29 IPR001005 -
Amo19g4448 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Amo19g4448 212 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4448 Amo-Chr19 161459809 161461137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4448 2 97 MYB Transcription Factor Family AT5G52260 42.478 1.44e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo19g4448 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4448 K09422 - gmx:100790724 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4448 19 161459809 161461137 Amo19g4448 19 161459809 161461137 ECH